Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04227 ATGTTAGGAGAAGTACAGCTTCAACCTCCACCTATGCAACAAAACCCTAGTGATTCCGATCCTTTACTCGATCATCAAGATCAGGTTGAAGAAGATCGAGACTCCCCTGGAACAACAACTTCTACTGAGATTAGGGATCAGGAAGATGTTGAAGCTGGGTTACTCCCTTGTTGTCGAATTTGTCTTGAAACCGATTCTGATCTTGAGGATGATTTGATATCTCCATGCATGTGCAAAGGAACCCAACAGTTTGTCCATCGTTCATGTCTTGACCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTTTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTAGAGTTGAAACATTTGAGGATAACTCCTGGCGTAAAATAAAGTTCCGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTAATTGCTGCTATCGGTGGCTTTGCGTACATCATGGACAAAGATGGGAATTTCAGGAACTCATTTGATGATGGGTGGGATAGGATACTGTCAAAGCATCCTATACCATTTTATTATTGTATTGGAGTGGTGGCCTTCTTTGTACTTATTGGATTTTTTGGCCTCATACTGCATTGCTCTTCCCTCAATAGCAATGACCCCAGAATGGCTGGTTGTCAAAACTGTTGTTACGGATGGGGAATCTTGGACTGCTTTCCTGCATCAATGGAGGCATGCTTCGCCCTTGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTGTAGCTTATGGTTTTCTTGCAGCCACCATGGGAATTCAAAGAATTTGGCAGAAGCATTATCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTACAGGGCAGTTATTTCCCTCCCAAGTTAGAACCTGAACATGAAAGTCGCCTGAAAATGCTTAAGCTTTTGTGA 942 0.4278 MLGEVQLQPPPMQQNPSDSDPLLDHQDQVEEDRDSPGTTTSTEIRDQEDVEAGLLPCCRICLETDSDLEDDLISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVETFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVVAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGVAYGFLAATMGIQRIWQKHYHILTKRELTKEYIVEDLQGSYFPPKLEPEHESRLKMLKLL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04227 313 SUPERFAMILY RING/U-box 56 113 - -
Trre16g04227 313 CDD RING_CH-C4HC3_MARCH 58 109 - -
Trre16g04227 313 ProSiteProfiles Zinc finger RING-CH-type profile. 50 115 IPR011016 GO:0008270
Trre16g04227 313 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 313 - -
Trre16g04227 313 SMART ringv_2 57 109 IPR011016 GO:0008270
Trre16g04227 313 MobiDBLite consensus disorder prediction 23 46 - -
Trre16g04227 313 MobiDBLite consensus disorder prediction 8 22 - -
Trre16g04227 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 122 IPR013083 -
Trre16g04227 313 MobiDBLite consensus disorder prediction 1 46 - -
Trre16g04227 313 Pfam RING-variant domain 58 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04227 Trre-Chr16 47262775 47266164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04227 1 313 C3H Transcription Factor Family AT1G11020 78.816 1.79e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04227 - - gmx:100782178 567.77