Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04224 ATGGAGGAACAAGATAAACTTCAAGAAACTAGACTTGAATCTCAACTTGATTCATGTTTTTCTTCTTCTTGCAAAAGTCTTGTGTTTCCTTCTAGACCTGGCTATGGTAAACTTGGGACAAAGTGTGTTGTCAAAGCTAATTACTTCCTTGCAGATATTTCAGTATCTGATTTAAGCCATTACCATGTTATTATAACTCCTGAAGTAATCTATAAAAAATCAAGAAAAGTTATCATAGCTAAGTTAGTGAGACTTCATCAGAACACTGAGTTGGGAAAGAGGCTTCCTGTTTATGATGGTGGAAAGAATCTTTACACTGCCGGTTCGCTTCCTTTTACACACAAGGAGTTCAATATAGTATTGAATGAGGATGATGAAGGTGCTAGTAGTACAAGGGAAAGAGAATTTGAAGTTGCAATTAAGTTTGTAGCTCATGTTAGCATGCATCAGTTACATGAGCTTCTAAGTGGAAAAAAAGTGGATACTCCAGAAGAAGCTCTTCATATCATTGACATTGTATTGAAGGAGCTTACATCTCATAGCTATGTATCATTTGGGAGGTTACTCTATTCTCCGGATTTAAGAAAACCGCATAGTCTGAGTGGTGGCTTGGAATCGTGGCACGGTTTCTACCAAAGTATAAGGCCTACTCAGATGGGATTATCGCTTAATGTTGACTTGTCATCATCGGCGTTTATAGAACCGCTCCCCGTGATTGACATTGTAGCTCAAATTTTAGGAAAAGATGTGTACTCAAAGCCAATTTCAGATGCAGATCGCGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTAGAAGTTACATATAGAGGAAGTTTTAGAAGGAAGTACAGGATAACAGGAGTAACATCACAGCCTACAAGGGAACTCTTTTTCCCTCTGGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATAATGCATCCTCATTTACCTTGCATTCAAGTAGGAAACGAAAAGAAGGCGAACTATTTGCCTATGGAGGCATGCAAGATTGTTGAAGGTCAGAGATATACAAAAGGGCTTAATGATAAACAGATAACTTCTTTGTTAAAAGTTTCATGCCAAAGGCCACGTGAAAGGGAGAAAGATATTCTACAGACGATTCATCAAAATGATTATCACTGTAATCCTTATGCAAAGGAGTTTGGCATCAGCGTAGACAACAAGCTTGCATCAGTCGAGGCTCGAGTTCTTCCTGCTCCATGGTTGAAATATCATGACACTGGAAGAGATACAAAAATCTTGCCACAATTTGGTCAGTGGAACATGGCAAACAAGAAAGTTATAAATGGAAGCAAAGTAAGATATTGGGCATGTATCAATTTCTCAAGAAATGTCCAACAAAGAACAGCTAATGCATTTTGCCAACAGTTAGTTCAGGCGTGCCAAACTTTAGGAATGGAGTTTAGTCAGGAACCTGTAATTCCTGTATATTCAGCAAGACCAGATATGGTTAAGAAGGCCTTGAAGTATGTACATTCTACTTCTATAAACAAACTTGATGGGAAAGAGCTAGAGTTGCTCATCGCGATTCTTCCGGACAACAACGGCTCTCTCTATGGTGATCTCAAAAAAATCTGCGAAACTGATTTAGGGCTGATTTCTCAATGCTGTCTTACAAAATATGTATTCAAGACTAATAGACATTATTTATCAAATGTAGCACTGAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCTATAAGTTGCAGGATTCCATTGGTTAGCGACATTCCAACAATAATTTTCGGAGCTGATGTAAGTCATCCAGAAGCCGGAGAGGATGTTTGTCCATCTCTTGCAGCCGTTGTAGCCTCCCAAGACTGGCCAGAAGTGACAAAGTATGCAGGATTGGTATGTGCTCAGCCTCATCGCCAGGAACTTATTAAAGACCTTTTCAAATGTTGGAACGATCCTCATCACGGTATTGTTTATGGTGGCATGATCAGAGAGCTTTTACTCTCATTTCAGAAGGCAACTGGAAAAAAACCACTTAGGATAATATTTTACAGGGATGGGGTGAGTGAAGGACAGTTCTACCAGGTTTTGCTATTTGAGCTTGATGCGATCCGTAAGGCTTGTGCATCTTTGGAACCTGGTTACCAACCTCCGGTTACATTTGTCGTTGTTCAGAAAGGGCATCACACTAGACTCTTCGCAAACAATCACAACGACAGAAACAGCACCGATAGAAGTGGGAATATTTTGCCAGGTACTGTAGTGGATTCGAAGATATGTCATCCTACCGAGTTCGACTTCTACTTGTGCAGTCACGCAGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTATATGGGACGACAATAACTTCAGTGCCGATGAGATTCAGTCCTTAACAAACAACTTGTGCTACACTTATGCAAGATGTACGCGATCTGTTTCTGTAGTGCCTCCTGTTTACTATGCGCATCTGGCAGCTTACAGAGCTCGATTCTACATGGAACCTGATGTCCATGAAAATGTAAAATCACAAGTTACAAGATCGAAAATTGAGTCAGTTCGGCCATTGCCAGCTCTAAAAGAGAAGGTGAAGAAAGTAATGTTTTACTGTTGA 2646 0.3972 MEEQDKLQETRLESQLDSCFSSSCKSLVFPSRPGYGKLGTKCVVKANYFLADISVSDLSHYHVIITPEVIYKKSRKVIIAKLVRLHQNTELGKRLPVYDGGKNLYTAGSLPFTHKEFNIVLNEDDEGASSTREREFEVAIKFVAHVSMHQLHELLSGKKVDTPEEALHIIDIVLKELTSHSYVSFGRLLYSPDLRKPHSLSGGLESWHGFYQSIRPTQMGLSLNVDLSSSAFIEPLPVIDIVAQILGKDVYSKPISDADRVKIKKALRGVKVEVTYRGSFRRKYRITGVTSQPTRELFFPLDEKMNMKSVVDYFQEMYGYTIMHPHLPCIQVGNEKKANYLPMEACKIVEGQRYTKGLNDKQITSLLKVSCQRPREREKDILQTIHQNDYHCNPYAKEFGISVDNKLASVEARVLPAPWLKYHDTGRDTKILPQFGQWNMANKKVINGSKVRYWACINFSRNVQQRTANAFCQQLVQACQTLGMEFSQEPVIPVYSARPDMVKKALKYVHSTSINKLDGKELELLIAILPDNNGSLYGDLKKICETDLGLISQCCLTKYVFKTNRHYLSNVALKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVSHPEAGEDVCPSLAAVVASQDWPEVTKYAGLVCAQPHRQELIKDLFKCWNDPHHGIVYGGMIRELLLSFQKATGKKPLRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPGYQPPVTFVVVQKGHHTRLFANNHNDRNSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVIWDDNNFSADEIQSLTNNLCYTYARCTRSVSVVPPVYYAHLAAYRARFYMEPDVHENVKSQVTRSKIESVRPLPALKEKVKKVMFYC 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04224 881 FunFam Argonaute 10 414 587 - -
Trre16g04224 881 Gene3D - 593 881 IPR036397 GO:0003676
Trre16g04224 881 Gene3D paz domain 230 354 - -
Trre16g04224 881 CDD Piwi_ago-like 394 844 IPR045246 -
Trre16g04224 881 SUPERFAMILY Ribonuclease H-like 515 846 IPR012337 -
Trre16g04224 881 ProSiteProfiles Piwi domain profile. 524 845 IPR003165 GO:0003676
Trre16g04224 881 Pfam Mid domain of argonaute 433 510 IPR032473 -
Trre16g04224 881 CDD PAZ_argonaute_like 235 349 - -
Trre16g04224 881 SUPERFAMILY PAZ domain 230 390 IPR036085 GO:0005515
Trre16g04224 881 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 36 846 - -
Trre16g04224 881 FunFam Protein argonaute-2 229 355 - -
Trre16g04224 881 ProSiteProfiles PAZ domain profile. 236 350 IPR003100 GO:0005515
Trre16g04224 881 Gene3D - 414 587 - -
Trre16g04224 881 SMART PAZ_2_a_3 240 372 IPR003100 GO:0005515
Trre16g04224 881 SMART Piwi_a_2 524 845 IPR003165 GO:0003676
Trre16g04224 881 Pfam N-terminal domain of argonaute 40 174 IPR032474 -
Trre16g04224 881 Pfam Argonaute linker 1 domain 186 233 IPR014811 -
Trre16g04224 881 FunFam protein argonaute 10-like 593 881 - -
Trre16g04224 881 Pfam PAZ domain 262 366 IPR003100 GO:0005515
Trre16g04224 881 SMART DUF1785_2 183 235 IPR014811 -
Trre16g04224 881 Pfam Argonaute linker 2 domain 376 422 IPR032472 -
Trre16g04224 881 Pfam Piwi domain 525 844 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04224 Trre-Chr16 47227481 47232525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04224 29 881 Eukaryotic Initiation Factors Gene Family AT5G43810 71.661 0.0 1335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04224 K11593 - gmx:100808457 1510.35