Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04223 ATGACATTGGACGACGATAGTTCAATCTATGTTGGAGGTCTCCCCTACGATGCCTCCGAAGATACAATTCGCACTGTCTTCAATTTGTATGGTGCAATTCTTGATGTCAAGATTATCAATGACCAACGTACAATAGGAAAATGCTATTGTTTTGTTACTTTCACAAACCCTAGGTCAGCAATTGATGCTATCAACGACATGAATGGAAGAACTATTGGTGGACGTGTGGTTAAAGTTAATGGGGTGAAGAGTCGTGGTGGTGTTGGTGGTGGCAGATTGAATTTTGGGAGGGAAAGAGAACGTTATTATCATCATAATGATGAAAGAAATGGTGATTGGGATCGTGGAGGCAGAGATCGAGATATTCGAGACCAAGATTATGATCATGGTAATGTGAAAGATGGATACAGAAATAGAGGTAGTGATTGGACTCGGCTTCGTGATAGGTCTCGAGATCATGATAGGTCCCGAGATCATGACAGGGATAGGGATAGAAGAGTTGAGCATATGCAAGATTACGGTGATCAAGCTAGAGAAAGCATGTTAGACCGTGATAGGTCCCGGGACCGTGACAGGGATAGGGATAGAAGAGTTGAGCATATGCAAGATTATGGTGATCAAGCTAGAGAAAGCATGTTAGACCGTGATAGGTCTCGGGACCGTGACAGGGATAGGGATAGAAGAATTGAGCATATGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGATCGTGATAGATCCCGAGACCGTGATAGGGATAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTACAGAAAGCATGTTAGATCGTGATAGATCCCGAGACCGTGATAGGGATAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGACCGTGATAGATCCCGAGACCGTGATAGGGATAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTATCCCGTGATGGGGATAGAAGAGTCGAACATATGCAAAATTACGACGATCAAGCTAGAGAAAGCATGTTAGATGATGATTGGAATCGTGACGACAATAGGGCTGAATATGAACAAGGAAACAGCAGGGTGCATGGTGGAGATGTGGAAACAGACATAAAGATGGATAGGATTAGTGATCCTATTCCTGATAAAAGTTTTGATGAACATAAAAAAGAACAGTCAAGGAGAAACATCGACTTGAATGTGACAAATCAAAACAGTCCTTCGGATTCTAATGGGGACCACAATGAGGAGCTAGAAGATGAATTTGAGACGTCAATGCAGAGGCTTGATCAACTAAAAAAAGAGGTTTCTAAGATGGAAGAGGGATTGGAAGAGAGAAGAATTGATGTTATGGAATTACAAAAGCACTCTAAGAAACTGGAGGATGCTGTGATTAATGCAAAGAAACAATCTTTATATCGCCAGATGCAATTGACCAAGCTGCATGAATGTTTTCTGCAAGTGCAAGAATCCACAGAAAGACTTAAAACTAGTGAAAAAGAATTCCAGGCTCTAGTTGATTCAGTAATGTTTGAGAGTGATGGTGATGGCGATGGTGGTCTTGGACAACTTACAAATGGAAGTCTTGATGGTAGATAG 1635 0.4116 MTLDDDSSIYVGGLPYDASEDTIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAINDMNGRTIGGRVVKVNGVKSRGGVGGGRLNFGRERERYYHHNDERNGDWDRGGRDRDIRDQDYDHGNVKDGYRNRGSDWTRLRDRSRDHDRSRDHDRDRDRRVEHMQDYGDQARESMLDRDRSRDRDRDRDRRVEHMQDYGDQARESMLDRDRSRDRDRDRDRRIEHMQDYDDQARESMLDRDRSRDRDRDRRVEHVQDYDDQATESMLDRDRSRDRDRDRRVEHVQDYDDQARESMLDRDRSRDRDRDRRVEHVQDYDDQARESMLSRDGDRRVEHMQNYDDQARESMLDDDWNRDDNRAEYEQGNSRVHGGDVETDIKMDRISDPIPDKSFDEHKKEQSRRNIDLNVTNQNSPSDSNGDHNEELEDEFETSMQRLDQLKKEVSKMEEGLEERRIDVMELQKHSKKLEDAVINAKKQSLYRQMQLTKLHECFLQVQESTERLKTSEKEFQALVDSVMFESDGDGDGGLGQLTNGSLDGR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04223 544 SUPERFAMILY RNA-binding domain, RBD 4 106 IPR035979 GO:0003676
Trre16g04223 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Trre16g04223 544 MobiDBLite consensus disorder prediction 524 544 - -
Trre16g04223 544 Gene3D - 2 99 IPR012677 -
Trre16g04223 544 SMART rrm1_1 8 80 IPR000504 GO:0003723
Trre16g04223 544 MobiDBLite consensus disorder prediction 409 423 - -
Trre16g04223 544 CDD RRM_SF 9 80 - -
Trre16g04223 544 PANTHER GEO13361P1-RELATED 7 207 - -
Trre16g04223 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Trre16g04223 544 MobiDBLite consensus disorder prediction 107 408 - -
Trre16g04223 544 MobiDBLite consensus disorder prediction 107 434 - -
Trre16g04223 544 Coils Coil 427 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04223 Trre-Chr16 47210001 47214467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04223 7 79 Eukaryotic Initiation Factors Gene Family AT1G22760 32.877 6.47e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04223 - - tpra:123921035 716.072