Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04222 ATGGCTTCACCATCTGAACTAGGCTTGGATTCCAAGCCACATAGCTACTCCATGTTACTCAAATCAGTTGGAGAACAAAGTGATCAAACCTACAAACTTGAAGAATTTCTTTCTCGCTTAGAAGAAGAACGTCTCAAAATCGACGCTTTCAAGCGTGAACTTCCTCTCTGCATGCAACTTCTCACAAACGCTATGGAAGCATCAAAGCAACAACTTCAAGCTTTTAGAGTGAATCAAGGAAATACAACAAAGCCAATTCTAGAAGAGTTCATACCAGTGAAGCAAATAACTTCATCAGAAACTATGGAAAAAACAACAAATAGTAATGTATGTGATAAGGCAAATTGGATGACAAGTGCACAATTATGGAGTCAAACAAGTGAAGGAACACAACAACAAAATTCAACAAAAGAAATTCCTGAAAATAATAATAATAATAATAATATTGGATTTAACATTAGTCCTAAACATAGAAATGGTGGAGCATTTTTACCATTTTCAAAAGAAAGAAATAATAACTCTGGTGTTCATCTTCCTGAACTAGCACTTGGTTCACCTCAAAAAGAGGTTATTGATGATAATAAGAAACATGTTGGAGAAGGAGAGAAGAGAGAAAACAATGAAGAAAAAGGAAGTCCAATAGGATCATCACATGCACAAACAACAAACAACAATTCAAATCAAACTCATAGGAAAGCAAGAAGATGTTGGTCACCTGATTTGCATAGAAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCAACACCAAAACAGATTAGGGAATTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTGCAGAAATATAGGCTACACACAAGAAGACCAAGTCCAAGTTCCCAAACAGGTGCACCAGCAGCACAGTTAGTTGTTTTAGGAGGAATATGGGTCCCACCAGAATATGCAACTGCAGCACATAATGGAGTAGGAACCCCTACTCTTTATGGTGCACATCCTACTTCTCATCATCTGACTCTGCCACACTATTGCACTGCTCCTGGACAGGATCAGTATTATACTACTGCGCCGCCGCAGCAGCAGCTACTTCCACCGCCTCATCACATGCATCATGTCTACAAGACTACGCCGCATGGTCAGGGTTCGCCGGAGACGGGTGGAGATGGGTTGGAGAGTATCGAGAATGGGAAGTCGGAGAGTAGTAGCTGGAAAGATGGGAGTTCTGAGGAGAATGAAGGGGAGAGGAAAGGGTTTGTTGAAGAGAGTAATGGGAGTGACATCACTCTCAAATTTTAA 1299 0.4018 MASPSELGLDSKPHSYSMLLKSVGEQSDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAFRVNQGNTTKPILEEFIPVKQITSSETMEKTTNSNVCDKANWMTSAQLWSQTSEGTQQQNSTKEIPENNNNNNNIGFNISPKHRNGGAFLPFSKERNNNSGVHLPELALGSPQKEVIDDNKKHVGEGEKRENNEEKGSPIGSSHAQTTNNNSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSSQTGAPAAQLVVLGGIWVPPEYATAAHNGVGTPTLYGAHPTSHHLTLPHYCTAPGQDQYYTTAPPQQQLLPPPHHMHHVYKTTPHGQGSPETGGDGLESIENGKSESSSWKDGSSEENEGERKGFVEESNGSDITLKF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04222 432 MobiDBLite consensus disorder prediction 124 154 - -
Trre16g04222 432 SUPERFAMILY Homeodomain-like 229 290 IPR009057 -
Trre16g04222 432 Coils Coil 33 53 - -
Trre16g04222 432 MobiDBLite consensus disorder prediction 212 232 - -
Trre16g04222 432 FunFam Myb family transcription factor 231 289 - -
Trre16g04222 432 Gene3D - 231 289 - -
Trre16g04222 432 MobiDBLite consensus disorder prediction 355 432 - -
Trre16g04222 432 Pfam Myb-like DNA-binding domain 234 285 IPR001005 -
Trre16g04222 432 MobiDBLite consensus disorder prediction 404 422 - -
Trre16g04222 432 MobiDBLite consensus disorder prediction 189 211 - -
Trre16g04222 432 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 405 IPR044787 GO:0003700|GO:0006355
Trre16g04222 432 MobiDBLite consensus disorder prediction 124 236 - -
Trre16g04222 432 NCBIfam myb-like DNA-binding domain, SHAQKYF class 232 287 IPR006447 GO:0003677
Trre16g04222 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 289 IPR017930 -
Trre16g04222 432 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04222 Trre-Chr16 47206117 47208254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04222 1 432 G2-like Transcription Factor Family AT2G03500 51.404 7.36e-120 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre16g04222 Myb_DNA-binding 9.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04222 - - tpra:123921036 785.023