Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04221 ATGTCTTCACTTATTATTTTCATTTTTCTTTTTTTATTTTCACTGAGTTTTCATTTCCGAGTTATCAACTCGGAACCAACTCAGGATAAGCAAGCTCTCCTTGCTTTTATTTCACAAACACCACACTCTAACCGTCTTCAATGGAATTCTTCCGATTCCGTTTGTAACTGGGTTGGTATTCAATGTGACGCTACTAAATCATATGTTTATTCTCTCCGTTTACCTGCCGTTGATCTTGTCGGTAAAGTTCCACCAAACACAATCGGACGGTTAACAAATCTCCGTGTTCTTAGTCTCCGTTCTAATGCTCTTTCTGGTGAGATCCCTTCTGATTTTTCTAATTTGACTTTTCTTCGTAGTATTTATCTTCAGAGAAATAAATTCTCCGGTGAGTTTCCTTCTAGTTTAACTCGCTTGACTCGTTTGACTCGGTTGGATCTTTCTTCTAATAACTTCACCGGTTCAATTCCTTTCTCTATCAACAATTTGACTCATCTTACTGGTTTGTTCTTAGAGAACAACACGTTCTCCGGTAGTCTTCCGAGCATCACTTCAAATTTGAACGGTTTCGATGTTTCTAACAACAATCTCAACGGTTCAATTCCCAAAACGCTGACAAAATTCCCTGAATCATCGTTCGCCGGAAACTTAGATCTCTGTGGTCCACCGTTGAAATCATGCACACCGTTTTTTCCGGCGCCGGCGCCATCACCGGATTCAATACCACCTGCTGATAAACCAAAGCACAAATCGAAAAAACTCTCCACCGGCGCCATTGTCGCAATCGTAGTCGGTTCTATTCTATTCATAGCTTTATTGCTTCTACTACTGTTACTCTGTCTCCGGAAACGCCGTCGCCGGACACCAGCAAAACCACCAAAGCCAGTCGTTGCAGCTCGTTCTGTTCCGGCAGAAGCCGGAACATCGTCTTCGAAAGACGATATAACCGGCGGTTCAGCCGAAGCAGAGAGGGAGAGAAACAAATTGGTGTTCTTCGACGGAGGAATATATAGTTTCGATTTGGAAGATTTGCTTAGAGCTTCAGCGGAGGTTTTGGGTAAAGGAAGTGTTGGAACGTCGTATAAAGCGGTGTTGGAAGAAGGAACTACGGTGGTTGTTAAAAGATTGAAAGATGTTGTTGTAACTAAGAAAGAATTTGAGATGCAAATGGAAATTTTGGGTAAAATTAAGCATGAAAATGTTGTTCCTCTTAGAGCTTTTTACTTCTCTAAAGATGAGAAATTACTTGTTTATGATTACATGCCAGCCGGTAGCTTATCTGCGTTGCTTCACGGGAGCAGAGGATCTGGGCGAACCCCGTTAGATTGGGACAACCGGATGAGAATAGCCCTTGGAGCATCGAGAGGACTAGCATGCCTCCATGTGTCAGGCAAAGTAATCCATGGCAACATCAAATCCTCCAACATCCTCCTTAAAGGACCTGACCATGACGCGAGCGTTTCGGACTTTGGTCTCAACCCATTATTCGGAAACGGATCCCCATCAAACCGTGTTGCAGGTTACCGTGCACCAGAAACCCTGGAAACCCGAAAAGTCACATTCAAGTCCGACGTGTACAGCTTTGGAGTCTTGTTGTTGGAGCTATTAACAGGAAAAGCACCCAATCAAGCTTCACTTGGAGAAGAAGGAATCGATCTACCAAGGTGGGTCCAATCTGTTGTTCGTGAAGAATGGACCGCAGAAGTTTTTGACGCGGAGTTGATGAGGTTTCACAACATTGAAGAAGAAATGGTTCAATTGTTACAGATTGCGATGGCTTGTGTTTCTGTGGTGCCTGATCAAAGACCAAGTATGCAAGATGTGGTACGCATGATTGAGGATATGCACCGCAGCGAAACTGATGAAGGTCTCCGACAGTCATCCGACGATCCTTCAAAAGGATCCGAGGGTCATACTCCACCTCCCGAATCAAGGACTCCACCTAGATCACGCACACCGTAG 1962 0.4404 MSSLIIFIFLFLFSLSFHFRVINSEPTQDKQALLAFISQTPHSNRLQWNSSDSVCNWVGIQCDATKSYVYSLRLPAVDLVGKVPPNTIGRLTNLRVLSLRSNALSGEIPSDFSNLTFLRSIYLQRNKFSGEFPSSLTRLTRLTRLDLSSNNFTGSIPFSINNLTHLTGLFLENNTFSGSLPSITSNLNGFDVSNNNLNGSIPKTLTKFPESSFAGNLDLCGPPLKSCTPFFPAPAPSPDSIPPADKPKHKSKKLSTGAIVAIVVGSILFIALLLLLLLLCLRKRRRRTPAKPPKPVVAARSVPAEAGTSSSKDDITGGSAEAERERNKLVFFDGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYMPAGSLSALLHGSRGSGRTPLDWDNRMRIALGASRGLACLHVSGKVIHGNIKSSNILLKGPDHDASVSDFGLNPLFGNGSPSNRVAGYRAPETLETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPSMQDVVRMIEDMHRSETDEGLRQSSDDPSKGSEGHTPPPESRTPPRSRTP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04221 653 Gene3D Phosphorylase Kinase; domain 1 315 420 - -
Trre16g04221 653 PANTHER OS05G0588300 PROTEIN 6 625 - -
Trre16g04221 653 MobiDBLite consensus disorder prediction 614 632 - -
Trre16g04221 653 Gene3D Ribonuclease Inhibitor 185 230 IPR032675 -
Trre16g04221 653 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Trre16g04221 653 SUPERFAMILY Protein kinase-like (PK-like) 350 617 IPR011009 -
Trre16g04221 653 MobiDBLite consensus disorder prediction 289 321 - -
Trre16g04221 653 MobiDBLite consensus disorder prediction 614 653 - -
Trre16g04221 653 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 421 626 - -
Trre16g04221 653 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Trre16g04221 653 Pfam Leucine rich repeat 78 128 IPR001611 GO:0005515
Trre16g04221 653 SUPERFAMILY L domain-like 28 211 - -
Trre16g04221 653 CDD STKc_IRAK 352 615 - -
Trre16g04221 653 Gene3D Transferase(Phosphotransferase) domain 1 421 634 - -
Trre16g04221 653 FunFam Probable inactive receptor kinase RLK902 26 184 - -
Trre16g04221 653 ProSiteProfiles Protein kinase domain profile. 346 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04221 653 FunFam pollen receptor-like kinase 1 316 420 - -
Trre16g04221 653 Pfam Protein kinase domain 349 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04221 Trre-Chr16 47165752 47169051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04221 2 633 Receptor kinase-like Gene Family AT5G58300 53.738 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre16g04221 Pkinase 4.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04221 - - gmx:100806857 981.859