Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04217 ATGGCTCATTCCAACTCTGATCAAACTCATAAAATGTTAGACGCTTATATCTATGATTACTTGATGAAGCGAGAGTTGTATGAAACCGCGAAAGCATTTCATGATGAAGGCGCGGTGGAAACTGATGTTGTTATCGATGCACCTGGCGGCTTTCTCTACGAGTGGTGGACTGTTTTCTGGGAATTGTTTATGGCCAAACAAGGTCTTTCAAACTCAGAACCAGCTTTATCTTACCTTCAGGCTCAAGAAATGCGGAAGCAAGAAGAGCTGGAGAGTATCCAGTTTGCATTACAGAGCCCTGCTCAGCAGCAGCAATATGGGGCTGAAACTCAAGTTCTTAATGGCAATGTTCTCTGTCCCATAAACTATGGTCCTTTGGCGAGGCAGAACCGAGTAGCTTCTAATACAATGGCACCACAACTAAGTGAGGACAGGTTGAAGTCTCCCCTCCATGGAAATGATTTTGGCAACATGCTCATTGAGATAATGGAATCTTATACCCGTGGTGGGAATCCAATCGAGGATAGTGCTTTTCTGTGGAACGCAACAACAGCATTAACCGGTGGACAGGCTTCAGGACAAACATTTCCCAGTGCACCTAGCATTTTACAAGGGAATCGTCAACAAGTTCAAAATCTGAACCGGCTACTTCTAGGGTCTACACAATACATGAACAGTGATATGAGTGCAATGATGAGGTCTCGAGCTGTTGTTTCAGAAGGATCCTTAATCGGTTTTCATGGTTCAAATCAAGGTGGTAGCGATTTGACTCTGAAAGGGCGGCCTGTGGAAGGACTGGAACAGCTTCATGCAGAAATTCTCCAGAAGCATAATTTGAGAATGTCTTCTCAATATTCCAATCAATTTTCACAAAGGCAGCAACTTATGCTTCAGGCACAACAGAATTTATTCAATCCATCTGTCAGTAGTTTTGATAGCAAAAGACCAAGGGTGCTTGTTGGGAGAGGTGGCCAATCAAATCCGGCAGGCGGTTCCGTTCCCAATATTGGAACACCTCAAATTGATTCCCCTGAATTGTTTCCTTTCCTTAAGGATTCCAAAAGTGGAGTCGGGCGAAAGCAAAAACGAAAAGTAGGACCATATTCAGGTCCTGGCAGTAGCTCTGGAACTGCAAACACAGTGGGGCCATCTTCTGGTTCACCTTCTACACCATCCATGCAGACACCGCTGCCAACTCCGCAACAGAATGATTTGGGATCACTTGCAGCAACACAGAATCAATTGGCTGATAAGGACCATCTCAAGAGTGATGGATCTTTGGGAGAAAAATTTGAGTCATTCTCATCTCTTGCTGATACAGTCCATAAAGGACGAGTTGGAATAGGATTCTCATTGAAGGAGATCAAACATGGAATGGCTAGTTCACATAAAGTTGACTGTTGTCACTTCTCCTCGGATGGAAAACTGCTTGTTACTGGTGGTCATGACAAAAAGGCTTCTCTTTGGTGCACAAAGTCGTTTAACCTGCAATCTACACTTGAAGAGCACACTCAATGGATAACTGATGTTAGATTTTGTCCAAGCATGTTCTGTGTTGCTACGTCCTCAGCCGATAAAACTGTGAAGGTTTGGGATGTCAATAATCCTGGTCATTCTATTCGGACATTTACAGGGAGTACAGCTGTGATGTCAATAGACTTTCACCCAAGTAAAGATGACCTTATCTGCTCTTGTGATAATAAAGAGATAAGATATTGGAGTATTGGAAAGGGTAGTTTAGTTGGGGTTTACAAGGGTGCTGTAACTCGGGTGAGATTTCAACCTGGTTTGGGAAAGCTTCTTGCAGCCGCAGTAAATAATCTAATACTCATCCTTGACGCAGAAACTCTGCGCTGCAAATTTAAATTGGAGGGTCACAAGAGCCCTGTTCATTCGCTGTGCTGGCACTCTTCTGGAGATTATCTTGCATCTGTCAGCGGTGATCAGGTTAAAATCTGGGCTATTGGATCTGATAGCTGCGGGGTATGTATTCAGGAATTGAATTCACATGGGACCAATGAAATATTCAAGACCTGTGTTTTCCATCCCATTTGTCATGTTTTGATCATTGGCTACAATGAGTCGCTTATGCTGTGGAACTTCATTGAAAGACAAAAAATGACCGTGCCTGCACATGACAATCTGGTTTCTGCCCTGGCAGTCTCTGATGTAACCGGGTTGGTGGCTTCAGTCAGCCATGACAAACATTTTAAAATCTGGAAGTGA 2226 0.4362 MAHSNSDQTHKMLDAYIYDYLMKRELYETAKAFHDEGAVETDVVIDAPGGFLYEWWTVFWELFMAKQGLSNSEPALSYLQAQEMRKQEELESIQFALQSPAQQQQYGAETQVLNGNVLCPINYGPLARQNRVASNTMAPQLSEDRLKSPLHGNDFGNMLIEIMESYTRGGNPIEDSAFLWNATTALTGGQASGQTFPSAPSILQGNRQQVQNLNRLLLGSTQYMNSDMSAMMRSRAVVSEGSLIGFHGSNQGGSDLTLKGRPVEGLEQLHAEILQKHNLRMSSQYSNQFSQRQQLMLQAQQNLFNPSVSSFDSKRPRVLVGRGGQSNPAGGSVPNIGTPQIDSPELFPFLKDSKSGVGRKQKRKVGPYSGPGSSSGTANTVGPSSGSPSTPSMQTPLPTPQQNDLGSLAATQNQLADKDHLKSDGSLGEKFESFSSLADTVHKGRVGIGFSLKEIKHGMASSHKVDCCHFSSDGKLLVTGGHDKKASLWCTKSFNLQSTLEEHTQWITDVRFCPSMFCVATSSADKTVKVWDVNNPGHSIRTFTGSTAVMSIDFHPSKDDLICSCDNKEIRYWSIGKGSLVGVYKGAVTRVRFQPGLGKLLAAAVNNLILILDAETLRCKFKLEGHKSPVHSLCWHSSGDYLASVSGDQVKIWAIGSDSCGVCIQELNSHGTNEIFKTCVFHPICHVLIIGYNESLMLWNFIERQKMTVPAHDNLVSALAVSDVTGLVASVSHDKHFKIWK 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04217 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 535 IPR001680 GO:0005515
Trre16g04217 741 Pfam WD domain, G-beta repeat 539 574 IPR001680 GO:0005515
Trre16g04217 741 Pfam WD domain, G-beta repeat 618 653 IPR001680 GO:0005515
Trre16g04217 741 Pfam WD domain, G-beta repeat 708 741 IPR001680 GO:0005515
Trre16g04217 741 Pfam WD domain, G-beta repeat 462 489 IPR001680 GO:0005515
Trre16g04217 741 Pfam WD domain, G-beta repeat 495 532 IPR001680 GO:0005515
Trre16g04217 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 709 741 IPR001680 GO:0005515
Trre16g04217 741 SMART WD40_4 577 613 IPR001680 GO:0005515
Trre16g04217 741 SMART WD40_4 660 700 IPR001680 GO:0005515
Trre16g04217 741 SMART WD40_4 493 532 IPR001680 GO:0005515
Trre16g04217 741 SMART WD40_4 616 654 IPR001680 GO:0005515
Trre16g04217 741 SMART WD40_4 451 490 IPR001680 GO:0005515
Trre16g04217 741 SMART WD40_4 702 741 IPR001680 GO:0005515
Trre16g04217 741 SMART WD40_4 536 574 IPR001680 GO:0005515
Trre16g04217 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 709 741 - -
Trre16g04217 741 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Trre16g04217 741 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 741 IPR044716 GO:0003714
Trre16g04217 741 Pfam LisH 11 36 IPR006594 GO:0005515
Trre16g04217 741 SUPERFAMILY WD40 repeat-like 451 741 IPR036322 GO:0005515
Trre16g04217 741 Gene3D - 400 583 IPR015943 GO:0005515
Trre16g04217 741 CDD WD40 462 741 - -
Trre16g04217 741 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Trre16g04217 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 535 - -
Trre16g04217 741 MobiDBLite consensus disorder prediction 368 405 - -
Trre16g04217 741 MobiDBLite consensus disorder prediction 307 405 - -
Trre16g04217 741 Gene3D - 584 741 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04217 Trre-Chr16 47109309 47116657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04217 454 701 Miscellaneous Gene Families AT5G08390 26.667 6.35e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre16g04217 WD40 0.21 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04217 - - mtr:11440246 945.651