Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04204 ATGTCATCATCAAGTGGAACAATTTGGAGCTATGAAGAAGAAAAATCATTTGAGAATGCAATAGCCATGCATTGGAATGAAAAAGAAGAAGAAAATTCAAATGAACAATGGGAAAAGATTGCTTCATGTGTCCCTAACAAAAGCATGGAAGAAGTGAAACAACATTACCAATTATTGGTAGATGATGTTAGTGCAATTGAGGCAGGTCATGTATCATTTCCAAATTATGCTAATGAATTAGAAACTACTACTAATTCTTCAAATAAAGATTCTTCTAAGTCCTCCACAAGTTCAGATAAGAGATCATCAACTTGTAATTTTGGAAGTGGGTTTTCTGGATTAGGACATGAATCTACCACACACCATAGTAGTGGTAAAGGTGGATTGTCGAGGTCATCATCGGAACAAGAAAGAAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAGGCTATTTTTACTTGGTCTAGACAAATTTGGAAAAGGAGATTGGAGGAGTATATCAAGGAACTTTGTGATATCAAGGACACCAACACAAGTAGCAAGTCATGCACAAAAGTATTTCATAAGGTTGAATTCAATGAATAGAGATAGAAGAAGGTCTAGTATTCATGATATTACTAGTGTTAACAATGGAGATGTAGCTAGTAATCATCAAGCACCAATAACAGGTCAACATGGTAACACAATTCCTTCAAATACAATGGGTTTAGGACAATCAATGAAGCATAGAGTTCAACCTCATCATCATCATCATCCTGGTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTGTTGTTGCTCCTCCTGCTCATATGACATCTGCAGTTGGAACTCCTGTTATGCTTCCTCATCATCATCCTCATCATCCACCTTATGTTGTACCTCTTGCTTACCCTATGGCACCTCCAACAATGCACCAATAA 930 0.3731 MSSSSGTIWSYEEEKSFENAIAMHWNEKEEENSNEQWEKIASCVPNKSMEEVKQHYQLLVDDVSAIEAGHVSFPNYANELETTTNSSNKDSSKSSTSSDKRSSTCNFGSGFSGLGHESTTHHSSGKGGLSRSSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNHQAPITGQHGNTIPSNTMGLGQSMKHRVQPHHHHHPGGLGMYGAPVGHPVVAPPAHMTSAVGTPVMLPHHHPHHPPYVVPLAYPMAPPTMHQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04204 309 PANTHER TRANSCRIPTION FACTOR KUA1 5 300 - -
Trre16g04204 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 192 IPR017930 -
Trre16g04204 309 SMART sant 140 190 IPR001005 -
Trre16g04204 309 SMART sant 5 62 IPR001005 -
Trre16g04204 309 SUPERFAMILY Homeodomain-like 138 193 IPR009057 -
Trre16g04204 309 Gene3D - 1 73 - -
Trre16g04204 309 CDD SANT 9 60 IPR001005 -
Trre16g04204 309 FunFam transcription factor MYB1R1 142 193 - -
Trre16g04204 309 MobiDBLite consensus disorder prediction 81 131 - -
Trre16g04204 309 Pfam Myb-like DNA-binding domain 143 188 IPR001005 -
Trre16g04204 309 Pfam Myb-like DNA-binding domain 9 58 IPR001005 -
Trre16g04204 309 Gene3D - 142 194 - -
Trre16g04204 309 FunFam Transcription factor SRM1 1 73 - -
Trre16g04204 309 CDD SANT 143 188 IPR001005 -
Trre16g04204 309 ProSiteProfiles Myb-like domain profile. 136 188 IPR001005 -
Trre16g04204 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 140 190 IPR006447 GO:0003677
Trre16g04204 309 MobiDBLite consensus disorder prediction 81 142 - -
Trre16g04204 309 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Trre16g04204 309 ProSiteProfiles SANT domain profile. 144 192 IPR017884 -
Trre16g04204 309 SUPERFAMILY Homeodomain-like 7 64 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04204 Trre-Chr16 46973098 46974269 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g04204 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04204 - - gmx:778049 453.366