Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04201 ATGTATTCATCAAATAGTTCCCTCAATGGAAATAACCTAACATTTTCATCTTCTAAATCACTTTTTTGTAATTCCTTTGAAAGCAACTCAACTTCATCAAAAGATCATCAAAACAATATTCATTCACTTTTTCCTCTTCCTCCTTTCCCTTTCTTTCAATTCCCTAATTATCCTGATGATGTTGTTGATGATCCCTTTCAAGACAATCAACACATGTTTCTCCAACAACATCATGATGATGATGGTGATTTCCAACTTCATCATTCACCTCATGTTGTGAGTACTGATCATAATCATAATCATCAAGATCAGCAGCGGCCTTCAAATTCATCGATAATCAACATTGCTAACAACGATATTGTTAATAATCTTGTTTCTGAAGCAGGTGCTACTAAAGGAAAAACAATAGTGAATCATCAGGTGAAGGAGATCCAACAAAGAAAAAGATCTAGCAAGCGAGATCGGCATAGTAAGATAAAAACCGCGAAAGGACTAAGGGATCGGAGAATGAGACTTTCTCTTGAAGTTGCAAAGAGGTTTTTTGGTCTTCAAGATATGTTAGGATTTGAAAAAGCAAGTAAAACAGTTGATTGGTTACTCAACCAATCAAAACTTGAAATCAAACATCTTGCAAGAGAAAAGAATCTTCATTTTCCTACTAAGAGTTCATCTTCAACTTCTGAATGTACTGAAGGAGTTTCAAGCTTGGATAATGAAGTTGAAAATCTAGAAGAGGAAGAGCCACAACAAAAACAAGAAAAAGTGATTATGATGAAAAGAACAAGAAATAGAACTAATAAGGTTTGTAGAAAGAGTGCATTCAACTCTATTAGTAGAGAAAAAGCAAGAGAAAGAGCAAGAGAAAGAACAAAAGAAAAATTAATGAAAGCTAGAACATCAATAGTACTAGTTGATGAATCAAGTTCAAAACAATGTAATGATGAAGGAAAAGGAACAAAAACTAACCTCATTTGGAACCCTTTTGAAAGTGTTGAAGAATCTGGAGGATGTACACATCAGAAACAAAGTGTGAATCATTCTTTTGATCATATGAAGCTGATTAATGAAGGTGAAGTTGAAAGAAACTCTCAAAAAGCAAAGGAACAAGATTCAGATGAAGATGATTCTTTGTTCATTATGAGTAAATGGAGTCCACCTATGATCTTCAATTCTCTCAATAACCTTCAACAACATCAATTTGAACAATTTCATCAATCCATGGAAAAACAATGTTGGGAAGGCTACAACAACCGCATCTAA 1260 0.3373 MYSSNSSLNGNNLTFSSSKSLFCNSFESNSTSSKDHQNNIHSLFPLPPFPFFQFPNYPDDVVDDPFQDNQHMFLQQHHDDDGDFQLHHSPHVVSTDHNHNHQDQQRPSNSSIINIANNDIVNNLVSEAGATKGKTIVNHQVKEIQQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEIKHLAREKNLHFPTKSSSSTSECTEGVSSLDNEVENLEEEEPQQKQEKVIMMKRTRNRTNKVCRKSAFNSISREKARERARERTKEKLMKARTSIVLVDESSSKQCNDEGKGTKTNLIWNPFESVEESGGCTHQKQSVNHSFDHMKLINEGEVERNSQKAKEQDSDEDDSLFIMSKWSPPMIFNSLNNLQQHQFEQFHQSMEKQCWEGYNNRI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04201 419 ProSiteProfiles TCP domain profile. 152 210 IPR017887 -
Trre16g04201 419 ProSiteProfiles R domain profile. 276 293 IPR017888 -
Trre16g04201 419 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 101 370 IPR005333 GO:0003700
Trre16g04201 419 MobiDBLite consensus disorder prediction 218 237 - -
Trre16g04201 419 Pfam TCP family transcription factor 151 295 IPR017887 -
Trre16g04201 419 Coils Coil 226 253 - -
Trre16g04201 419 MobiDBLite consensus disorder prediction 356 375 - -
Trre16g04201 419 MobiDBLite consensus disorder prediction 218 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04201 Trre-Chr16 46916089 46917544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04201 13 322 TCP Transcription Factor Family AT3G18550 33.939 6.58e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre16g04201 TCP 2.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04201 - - tpra:123923172 630.943