Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04189 ATGCCTCAACCAACATCAGTGGCTTTGTGTTATGCACAACAACAACTACAGGATTCTGCTCATGATAATATCGACAATGAAAGCATGAAAATTGCTCTCATATTCAATATGGATGCTGGTTATTGTGATGTTGCTGTTATTGCTGCTACAGCAAATGAAAAATGCCGAATAAAAGCCTTGACAGGAAGTACTATTGGTGGAGAAGACTTGCTTGGAAATATGATGCGTCATCTATTACCTGATTCTGAAAATATATTCAAGAAACATGTTCACGAGGATGGAGAAATTAAATCGATGGCTCTTTTTCGATGTGAAATCCAGGAAGCGATTACTCGGCTTTCGTCTCAGACACATGTTGAGGTTGATTTAGATTTGGGATATGGTTTGAAGATATGCAAGGCAGGAGGAGTTTGA 414 0.3865 MPQPTSVALCYAQQQLQDSAHDNIDNESMKIALIFNMDAGYCDVAVIAATANEKCRIKALTGSTIGGEDLLGNMMRHLLPDSENIFKKHVHEDGEIKSMALFRCEIQEAITRLSSQTHVEVDLDLGYGLKICKAGGV 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04189 137 Gene3D - 2 15 - -
Trre16g04189 137 Gene3D Actin; Chain A, domain 4 67 124 - -
Trre16g04189 137 Gene3D - 25 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04189 Trre-Chr16 46785524 46785937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04189 3 122 Calmodulin-binding Proteins AT1G56410 30.645 2.32e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04189 K09489 - qsu:112038141 155.606