Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04180 ATGGCTTCTATCTTCAAAGCTGCCTCACACCCACTTTTCCTTATCTTGATTCTTTTCTCTGCCTCCCATTTTTTGGTCATCAATTGTACTGAATTTGAAGTTGGAGGTAGAATTGGTTGGGTTGTCCCTAACTCAAAGGACAAAGATGAAATGTATAACCAATGGGCTTCCCAAAATAGATTCAAAATTGATGACACCATTCGTTTCAAGTACGAGAAAGACTCGGTGATGGTGGTGAGTGAAGAAGAATATGAAAGATGCAAATCCGCTCGTCCACTCTTTTTCGGCAACAATGGTGACACAGTTTTCAAATTTGAACGACCGGGATTGTTTTACTTCATTAGTGGTGTTAGTGGTCATTGTACAAGAGGACAGAAAATGATCATCAAGGTTTTGGACATTGAACCAGAACAAGAACCAACAGCACCTTCACCACAATCTGCAAATGAGAATGCACCAACAGGACAATCTAAAGCTGCTCAAATAACTCCTATTACTATCACAATATCCACACTCTTTGCTTTGTCATTCTTAGGCATGATTTATGTTTGA 552 0.3931 MASIFKAASHPLFLILILFSASHFLVINCTEFEVGGRIGWVVPNSKDKDEMYNQWASQNRFKIDDTIRFKYEKDSVMVVSEEEYERCKSARPLFFGNNGDTVFKFERPGLFYFISGVSGHCTRGQKMIIKVLDIEPEQEPTAPSPQSANENAPTGQSKAAQITPITITISTLFALSFLGMIYV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04180 183 MobiDBLite consensus disorder prediction 138 157 - -
Trre16g04180 183 FunFam Early nodulin-like protein 1 29 136 - -
Trre16g04180 183 Gene3D - 29 135 IPR008972 -
Trre16g04180 183 Pfam Plastocyanin-like domain 49 125 IPR003245 GO:0009055
Trre16g04180 183 PANTHER BLUE COPPER PROTEIN 30 148 IPR039391 GO:0009055
Trre16g04180 183 MobiDBLite consensus disorder prediction 140 157 - -
Trre16g04180 183 CDD OsENODL1_like 30 132 IPR041846 -
Trre16g04180 183 ProSiteProfiles Phytocyanin domain profile. 30 133 IPR003245 GO:0009055
Trre16g04180 183 SUPERFAMILY Cupredoxins 29 132 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04180 Trre-Chr16 46742788 46744079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04180 8 175 Phytocyanin Superfamily AT1G48940 45.714 7.38e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04180 - - gmx:102667643 232.646