Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04179 ATGGCAGAACCAGAAAATAACCTTCAAGTTTCTTCATCTATGAATGAAACCAATAACAAGCATAAACAGAAGAAGAAGAAGAAGCACGACAAAAAGAGACCTCGTGATATTGTTGAGGAAGAAGAAGAGAATGTGAATAATACTCATAGCAATGGAGAATCTTCGAAAAAGAAGAAGAATAAGAAGAAGGAGGAGGAGGAGAATGAAGTGGAAGTAGAAAATGAATTGGAAGAGAAAAAAGTGAAGAACAATAGTGGTTCTGGAATTATGAGCAATGAATCATTTGCTTCTCTGGAATTGTCTAAATCTACTTCTAAAGCCATTATGGGTATGGGATTCCAAAACATGACTCAGATTCAAGCAAGAGCAATTCCACCACTTTTGAATGGAAAAAATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTAATTCCTGCTGTGGAGCTTTTGCACAAGCTTAAATTTAATCCTCGAGATGGAGCTGGTGTTGTTGCCATATGCCCCACTAGAGAGCTTGCTATTCAGACACACGATGTTGCCACGGAGCTTCTAAAGTATCATTCGCAAACTCTTGGATTGCTTATTGGAGGTTCATCGAGAAAAACTGAAGCTCAACACCTTGCTAAAGGAATAAATATATTGGTAGCTACCCCTGGTCGTCTTCTGGATCATCTACAAAATACCAAGAGATTCATTCATAATAAACTGAAGTGCCTCGTTATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGATGAATTGAGGCAGATTCTCAAGATCCTCCCAAAGGACAGGCAGACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAAGATCTTGCTCGGTTGTCATTTCAAGAGACTCCTATCTATATTGATGTAGACGATGGAAGAAAGAAGGTCACAAATGAAGGATTGCTTCAGGGTTATGTTGTTGTCCCCTGCGAAAAGCGATTTATGGTTCTCTATTCCTTCTTGAAGAGGCATCAATCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACAGCGTCAAATTCCATGCAGACATTTTTAATCACATCAATTTGCATTGTGCAAGTATTTATGGAAAACAAAAGCAGCAGACCCGGACAACTACTTTCTTTGCCTTCTGCAAAGCAGAAAATGGAGTCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTAGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCGCCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAAGTGGAAAAGGCAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGAAGCTAAGGTTCCTGTGAAAGAATACGCTTATGATGAAAAGAAGGTGGCAAACGTACAGTCTCACCTGGAGAATTTGGTTGGCGAAAATTATTTTTTGAACAAAATGGCTAAAGAAGCTTATAGATCATACATATTAGCATACAATTCACATTCCATGAAGGATATATTCAGTGTTAAACGCCTTGATTTGCAGGCTGTTGCGGCTTCATTCTGTTTTTCGAGCCCTCCAAATGTGAGTATAAATATAAACACCAGCAATCAAAGGAAGAAAACACGTAAAGTTGATGGAAGTAGACATGGATTCAACCCCAACAATCCTTATGGAAAGCGAAATGCTGATGATAAGCGACAATTTGTGAGGCATTGA 1737 0.3944 MAEPENNLQVSSSMNETNNKHKQKKKKKHDKKRPRDIVEEEEENVNNTHSNGESSKKKKNKKKEEEENEVEVENELEEKKVKNNSGSGIMSNESFASLELSKSTSKAIMGMGFQNMTQIQARAIPPLLNGKNVLGAARTGSGKTLAFLIPAVELLHKLKFNPRDGAGVVAICPTRELAIQTHDVATELLKYHSQTLGLLIGGSSRKTEAQHLAKGINILVATPGRLLDHLQNTKRFIHNKLKCLVIDEADRILEANFEDELRQILKILPKDRQTALFSATQTKKVEDLARLSFQETPIYIDVDDGRKKVTNEGLLQGYVVVPCEKRFMVLYSFLKRHQSKKVMVFFSSCNSVKFHADIFNHINLHCASIYGKQKQQTRTTTFFAFCKAENGVLLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGESGKGNALLFLIPEELQFLRYLKEAKVPVKEYAYDEKKVANVQSHLENLVGENYFLNKMAKEAYRSYILAYNSHSMKDIFSVKRLDLQAVAASFCFSSPPNVSININTSNQRKKTRKVDGSRHGFNPNNPYGKRNADDKRQFVRH 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04179 578 CDD DEADc_DDX18 104 301 IPR044773 GO:0003724|GO:0005524
Trre16g04179 578 FunFam RNA helicase 310 540 - -
Trre16g04179 578 MobiDBLite consensus disorder prediction 1 17 - -
Trre16g04179 578 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 245 253 IPR000629 -
Trre16g04179 578 Pfam Helicase conserved C-terminal domain 329 433 IPR001650 -
Trre16g04179 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 299 IPR014001 -
Trre16g04179 578 SMART DUF4217_3 474 537 IPR025313 -
Trre16g04179 578 Coils Coil 55 82 - -
Trre16g04179 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Trre16g04179 578 Pfam DEAD/DEAH box helicase 117 288 IPR011545 GO:0003676|GO:0005524
Trre16g04179 578 MobiDBLite consensus disorder prediction 538 578 - -
Trre16g04179 578 MobiDBLite consensus disorder prediction 1 88 - -
Trre16g04179 578 CDD SF2_C_DEAD 314 444 - -
Trre16g04179 578 Gene3D - 312 552 IPR027417 -
Trre16g04179 578 Pfam Domain of unknown function (DUF4217) 475 535 IPR025313 -
Trre16g04179 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 483 IPR001650 -
Trre16g04179 578 PANTHER RNA HELICASE 33 481 - -
Trre16g04179 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 456 IPR027417 -
Trre16g04179 578 SMART ultradead3 112 317 IPR014001 -
Trre16g04179 578 MobiDBLite consensus disorder prediction 33 82 - -
Trre16g04179 578 Gene3D - 39 303 IPR027417 -
Trre16g04179 578 SMART helicmild6 353 434 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04179 Trre-Chr16 46734129 46741134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04179 93 448 Eukaryotic Initiation Factors Gene Family AT1G72730 31.111 6.63e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04179 K13179 - gmx:100797375 886.33