Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04176 ATGACAAAAATAATTAAAGAGATGTTACCTCCAGATGTACGCGTTGCAAGAGACACCCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAATCTCGTCTCATCAGAGTCCAATGAAGTATGTAGTAGAGAAGACAAGCGGACTATTGCACCTGAGCACGTATTGAAGGCTCTACAGGTGCTTGGATTTGGTGAGTACATTGAAGAAGTTTGTGCAGCATACGAACAGCACAAGCTGGAGACCATGCAGGACTCTTTAAAAGGTGGTAAATGGAGCAATGGAGTTGAGATGACTGAGGAAGAGGCATTAGCAGAACAACAAAGAATGTTTGCAGAGGCACGTGCTAGGATGAACGGTGGCGCCATTGCTTCTAAGCAGCCAGATGGTGACCAAAGTTTAGATAGCTAA 411 0.4331 MTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALQVLGFGEYIEEVCAAYEQHKLETMQDSLKGGKWSNGVEMTEEEALAEQQRMFAEARARMNGGAIASKQPDGDQSLDS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04176 136 FunFam Negative cofactor 2 beta 1 123 - -
Trre16g04176 136 Gene3D Histone, subunit A 1 123 IPR009072 GO:0046982
Trre16g04176 136 PANTHER PROTEIN DR1 HOMOLOG 1 135 IPR044255 -
Trre16g04176 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2 59 IPR003958 -
Trre16g04176 136 SUPERFAMILY Histone-fold 2 123 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04176 Trre-Chr16 46712446 46714877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04176 1 132 CCAAT-DR1 Transcription Factor Family AT5G23090 80.597 3.73e-77 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre16g04176 CBFD_NFYB_HMF 2.5e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04176 K21751 - gmx:100807912 254.988