Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04175 ATGGATCCCATGGATATCGTCGGAAAATCGAAGGAAGATGCTTCGCTTCCTAAAGCAACAATGACAAAAATAATTAAAGAGATGTTACCTCCAGATGTACGCGTTGCAAGAGACACCCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAATCTCGTCTCATCAGAGTCCAATGAAGTATGTAGTAGAGAAGACAAGCGGACTATTGCACCTGAGCACGTATTGAAGGCTCTACAGGTGCTTGGATTTGGTGAGTACATTGAAGAAGTTTGTGCAGCATACGAACAGCACAAGCTGGAGACCATGCAGGACTCTTTAAAAGGTGGTAAATGGAGCAATGGAGTTGAGATGACTGAGGAAGAGGCATTAGCAGAACAACAAAGAATGTTTGCAGAGGCACGTGCTAGGATGAACGGTGGCGCCATTGCTTCTAAGCAGCCAGATGGTGACCAAAGTTTAGATAGCTAA 471 0.4352 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALQVLGFGEYIEEVCAAYEQHKLETMQDSLKGGKWSNGVEMTEEEALAEQQRMFAEARARMNGGAIASKQPDGDQSLDS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04175 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Trre16g04175 156 FunFam Negative cofactor 2 beta 6 143 - -
Trre16g04175 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Trre16g04175 156 Gene3D Histone, subunit A 4 143 IPR009072 GO:0046982
Trre16g04175 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04175 Trre-Chr16 46711647 46714877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04175 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 83.117 2.10e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre16g04175 CBFD_NFYB_HMF 1e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04175 K21751 - gmx:100807912 292.352