Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04173 ATGGCTGGTGGAGGAAGAAGGAGACATCATCATTTTAGTAAGATTCATGCATTTTCATGTGGTAAAGCATCAATGAAACAAGATGAACAATCACTTATAGGAGGACCTGGTTTTTCAAGAAAAGTTTATTGCAATGATTCAGAACGTGCTATGTCTAGTCTTTATAATTATGGTGATAATTATGTTAGAACTACTAAGTATACAGTTGCTACTTTTCTACCTAAATCTTTGTTTGAACAGTTTAGAAGAGTTGCAAATTTTTACTTCTTAGTTGTTGCTATTTTGTCTTTCTTCCCTGTTGCTCCTTATTCTGCTGTTAGCAATGTTATTCCTCTTCTTGTTGTTGTTTCTGCTACTATGGCTAAAGAGTTCATTGAAGATTTTCAGCGGAAAAAACAGGATATAGAAATGAATAACAGAAAAGTGAAAGTACATAGTGGAGGTGGTGTTTTTGATTATTCTAAATGGAGAGATTTAAAAGTTGGAGACATAGTAAAAGTGGAAAAAGATGAGTATTTTCCTGCTGATCTCATATTACTTGCATCAAACTATGATGATGCAATTTGCTATGTTGATACGATGAATCTCGACGGAGAAACAAATCTTAAACTAAAACAAGCACTAGAAGGAACTTCAAAATTTCTAGAAGACTCAAACTTTCAGAATTTCAAGGCTGTGATAAGATGCGAAGATCCAAACGCAAATTTGTATGCGTTTGTAGGAAGTTTAGAGATCGAAGAAGATCAACAATATCCACTTGCACCTCAGCAGCTTCTTCTTAGAGACTCTAAGTTGAAGAACACAGATTTTATCTATGGTGTCGTGATCTTTACCGGTCACGATACAAAAGTTATGCAGAATTCAACAGATCCTCCTTCCAAGAGAAGCAAGATTGAGAAAAGAATGGACAAAGTTATATACTGTTTGTTCTTTGTATTGATTTTGGTTTCATTTATCGGTTCGATTTTCTTCGGTATTTGGACAAAGAAGGATACTAAAAATGGAAGAATGAAGAGATGGTACCTTAATCCTAATGATACTACAGTTTACTATGATCCTCATAAAGCAGTACTTGCAGCAATTTATCATTTCCTTACAGCATTGATGTTGTATGGTTACTTCATTCCGATTTCGTTGTATGTTTCCATTGAAGTTGTGAAAGTTCTTCAAAGCATTTTCATCAACAATGATTTGAACATGTATCACGAGGAAACCGATAAACCAGCGCATGCTCGTACGTCGAATTTGAATGAAGAACTTGGTCAAGTTGATACCATACTTTCGGATAAAACCGGAACATTGACTTGCAATTCTATGGAATTTATCAAGTGTTCTATCGGTGGAGTTGCTTACGGAAAAGGATTTACCGAAGTCGAGAGAGCTTTATCTAAGAGAAAAGATTCATATTTCGGTCGAAAGTTGAAAAATGACAAAAATGTTGCAAAGGCTACTGAATCAAAATCAACCATTAAAGGATTTAACTTTTCGGATGAAAGGATCATGAATGGAAATTGGGTGAGACAACCTAATGCCAATGTGATACAAAGCTTTCTAAGGGTATTGGCTGTATGCCATACTGCAATACCTGAAGTCGATGAAGCAACCGGTAAAATTTCATACGAAGCTGAATCACCAGACGAGGCTGCTTTTGTTGTTGCGGCAAGAGAATTCGGATTTGAATTTTATGAAAGGACACATGCAGCTATTTCACTTCATGAATTAGACCTCAATTCAAACATGAAATCAGAAAGGTCCTACAATATTTTAAATGTATTAGAGTTTAGTAGTGCAAGAAAGCGAATGTCCGTAATCGTTAGAGATCACAAAGGAAAACTACTGCTACTTAGCAAAGGCGCTGACAGTGTCATGTTTGAACTACTTGGAAAGAATGGAAGGGAATTTGAAGAGCAGACTAAGTACCACATTAATGAATATGCCGATTCTGGTTTGAGGACGTTGATACTTGCTTACCGTGAACTTGACGAGGAAGAGTACAAACAGTTTAATCGAGAGTTGACAGACGCTAAAAACTTAGTGAGTGCAGATCAGGAGCAGATTGTAGAAGACATATTGCAAAAGATTGAGAAGGATTTGATTCTTCTTGGCGCTACCGCAGTTGAAGATAAACTACAAGACGGGGTTCCTGAATGCATCGACAAACTAGCACAGGCTGGGATTAAGTTATGGGTATTGACCGGTGATAAAATGGAGACAGCGATTAATATCGGATTTGCTTGTAGTTTGCTTAGACAAGGAATGAAACAAATTATAATTAATTCCGATACTCCTGAAAACAAATCGCTCGAGAAAATGGAGGACAAATCTGCTGCTGAAGCGGCAATTAAGGCAAGTGTTGTTCGTCAAATAACGGAGGCAAAGACGTTACTTTCTAGATCAGATGACAATTCTGAGGCATTAGCTTTGATCATTGATGGGAAATCTCTTGCTTATGCGTTAGAAGACGATGTAAAGAACTTGTTTCTTGAACTTGCGATTGGTTGCGCATCTGTTATATGCTGTCGTTCGTCTCCAAAGCAAAAAGCACTTGTTACTAGGTTGGTTAAGATGAGACCTGGTAGTACAACTCTAGCTATTGGAGATGGTGCTAATGATGTTGGTATGCTCCAAGAAGCAGATATTGGAATCGGTATCAGTGGTGTCGAAGGAATGCAAGCAGTTATGTCAAGTGATATCGCCATTGCTCAGTTTCGTTATCTCGAACGCTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGAATCTCATCTATGATATGTTACTTCTTTTACAAGAATATCACCTTCGGCTTCACTTTGTTCTTCTATGAGATGTATACCTCATTCTCCGGCCAAGCTGCATACAATGATTGGTTCATGTCATTTTATAATGTATTCTTCACTTCACTTCCTGTAATTGCTTTAGGAGTTTTCGATCAAGATGTCTCATCCAAATTATGTCTCAAGTTTCCATTACTATACCAAGAAGGTGTACAAAACTTACTATTCAGCTGGAAAAGAATAATTGGTTGGGCATTAAACGGAGTTGCAAGTTCGACCATCATATTCTTCTTCTGCATTCGCGCGCTTGAGCATCAATCGTTTCGCAAAGGTGGTGAAGTTGTTGACTTAGAAATTCTCGGCGCCACAGTGTACACATGTGTTGTGTGGGTGGTGAATTGCCAAATGGCGTTATCGATCACATACTTTACATACATACAACATTTATTCATATGGGGAAGCATCGGAACATGGTACATTTTCCTCTTGGCATATGGAGCTATAGATTCTTCTCTATCAACAACTGCTTATAAGGTTTTCATCGAAGCATGTGCACCATCACTATCTTATTGGATTGTTACTTTGCTCGTTCTTATTGCCGCATTGCTTCCATATTTCTTGTTCTCTACTATTCAACTGCGGTTCTTCCCGGTGTATCATCAAATGATACAGTGGATACGAAAGGATGGACAAGCTAATGATCCGGAATTTTGTGATATGGTGCGACAGAGATCAATTCGACATACAACGGTTGGATTCACTGCTCGTTTGGAAGCTTCTAGACGTTTTGAAGCATCTAGACGTTCAGAAATATCGTTAGTACCTATTGACGGGAAGTCTGCAGTGAACCAATAA 3633 0.3776 MAGGGRRRHHHFSKIHAFSCGKASMKQDEQSLIGGPGFSRKVYCNDSERAMSSLYNYGDNYVRTTKYTVATFLPKSLFEQFRRVANFYFLVVAILSFFPVAPYSAVSNVIPLLVVVSATMAKEFIEDFQRKKQDIEMNNRKVKVHSGGGVFDYSKWRDLKVGDIVKVEKDEYFPADLILLASNYDDAICYVDTMNLDGETNLKLKQALEGTSKFLEDSNFQNFKAVIRCEDPNANLYAFVGSLEIEEDQQYPLAPQQLLLRDSKLKNTDFIYGVVIFTGHDTKVMQNSTDPPSKRSKIEKRMDKVIYCLFFVLILVSFIGSIFFGIWTKKDTKNGRMKRWYLNPNDTTVYYDPHKAVLAAIYHFLTALMLYGYFIPISLYVSIEVVKVLQSIFINNDLNMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIGGVAYGKGFTEVERALSKRKDSYFGRKLKNDKNVAKATESKSTIKGFNFSDERIMNGNWVRQPNANVIQSFLRVLAVCHTAIPEVDEATGKISYEAESPDEAAFVVAAREFGFEFYERTHAAISLHELDLNSNMKSERSYNILNVLEFSSARKRMSVIVRDHKGKLLLLSKGADSVMFELLGKNGREFEEQTKYHINEYADSGLRTLILAYRELDEEEYKQFNRELTDAKNLVSADQEQIVEDILQKIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIINSDTPENKSLEKMEDKSAAEAAIKASVVRQITEAKTLLSRSDDNSEALALIIDGKSLAYALEDDVKNLFLELAIGCASVICCRSSPKQKALVTRLVKMRPGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFFYEMYTSFSGQAAYNDWFMSFYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGVQNLLFSWKRIIGWALNGVASSTIIFFFCIRALEHQSFRKGGEVVDLEILGATVYTCVVWVVNCQMALSITYFTYIQHLFIWGSIGTWYIFLLAYGAIDSSLSTTAYKVFIEACAPSLSYWIVTLLVLIAALLPYFLFSTIQLRFFPVYHQMIQWIRKDGQANDPEFCDMVRQRSIRHTTVGFTARLEASRRFEASRRSEISLVPIDGKSAVNQ 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04173 1210 FunFam Phospholipid-transporting ATPase 118 289 - -
Trre16g04173 1210 Pfam E1-E2 ATPase 137 362 - -
Trre16g04173 1210 FunFam Phospholipid-transporting ATPase 701 905 - -
Trre16g04173 1210 SFLD Haloacid Dehalogenase 409 916 - -
Trre16g04173 1210 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 31 1156 - -
Trre16g04173 1210 ProSitePatterns E1-E2 ATPases phosphorylation site. 429 435 IPR018303 -
Trre16g04173 1210 NCBIfam phospholipid-translocating P-type ATPase 57 1150 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre16g04173 1210 Pfam Phospholipid-translocating P-type ATPase C-terminal 893 1143 IPR032630 -
Trre16g04173 1210 NCBIfam HAD-IC family P-type ATPase 831 948 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g04173 1210 Gene3D - 540 675 IPR023299 GO:0000166
Trre16g04173 1210 Pfam Cation transport ATPase (P-type) 536 625 - -
Trre16g04173 1210 SUPERFAMILY HAD-like 422 920 IPR036412 -
Trre16g04173 1210 CDD P-type_ATPase_APLT_Dnf-like 59 1025 - -
Trre16g04173 1210 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 500 702 IPR023299 GO:0000166
Trre16g04173 1210 SUPERFAMILY Calcium ATPase, transduction domain A 143 287 IPR008250 -
Trre16g04173 1210 Pfam Phospholipid-translocating ATPase N-terminal 42 107 IPR032631 -
Trre16g04173 1210 Gene3D - 697 905 IPR023214 -
Trre16g04173 1210 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Trre16g04173 1210 PRINTS P-type cation-transporting ATPase superfamily signature 751 761 - -
Trre16g04173 1210 PRINTS P-type cation-transporting ATPase superfamily signature 427 441 - -
Trre16g04173 1210 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 1143 IPR023298 -
Trre16g04173 1210 FunFam Phospholipid-transporting ATPase 543 701 - -
Trre16g04173 1210 SFLD p-type atpase 409 916 IPR044492 -
Trre16g04173 1210 Gene3D - 109 290 - -
Trre16g04173 1210 Coils Coil 658 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04173 Trre-Chr16 46664496 46669200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04173 1 1188 Primary Pumps ATPases AT1G68710 68.059 0.0 1749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04173 K01530 - gmx:100796405 2014.19