LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g04170	ATGGAAAACAAAGACACTTCAAAACCTCCAAACCTAACTCATCAAACTCACAACAACAACAACAAAAACATGTCTTTGATCTCTCATGAAATAGATAAATCCAATGAGAAGAAAAAAAGTAGCACTATTAAGAAAATTCATAAAATATCAAACAAGGGTCAGAAAAAGTATCTAGGAGTAAGACAAAGACCTTCAGGAAGATGGATAGCTGAGATCAAAGACTCATCACAGAAACTAAGACTTTGGTTAGGAACTTTTGACAAAGCAGAAGATGCTGCTATGTCTTATGACTCTGCTGCAAGACTTCTTAGAGGAAGAAATGCAAAAACAAATTTTCCAAATACTCATGAACAAGATTTCAGCATTTTAGGGAAGAATCCAAGAGCTTTTCAGCTTCTTAAACATGCAGTGATGAAAAACCATGCAGTTTCATCTTCTTCATCTGTTTATTCTACTGTTATGATGCCATGGAAAAATGATCAACTAGACGCGATTGTCGAAGAAACTATTGTTTGTTCTATTCCTGATGAAGGTGAAGGTTCTGCTATAGGGTGTAGTGGAATTTCATTTGGAAGTTCTAAGTTTTGGTGA	591	0.3503	MENKDTSKPPNLTHQTHNNNNKNMSLISHEIDKSNEKKKSSTIKKIHKISNKGQKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEDAAMSYDSAARLLRGRNAKTNFPNTHEQDFSILGKNPRAFQLLKHAVMKNHAVSSSSSVYSTVMMPWKNDQLDAIVEETIVCSIPDEGEGSAIGCSGISFGSSKFW	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g04170	196	ProSiteProfiles	AP2/ERF domain profile.	56	113	IPR001471	GO:0003700\|GO:0006355
	Trre16g04170	196	SUPERFAMILY	DNA-binding domain	56	114	IPR016177	GO:0003677
	Trre16g04170	196	CDD	AP2	55	115	IPR001471	GO:0003700\|GO:0006355
	Trre16g04170	196	PRINTS	Ethylene responsive element binding protein signature	79	95	IPR001471	GO:0003700\|GO:0006355
	Trre16g04170	196	PRINTS	Ethylene responsive element binding protein signature	57	68	IPR001471	GO:0003700\|GO:0006355
	Trre16g04170	196	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	36	148	-	-
	Trre16g04170	196	FunFam	ethylene-responsive transcription factor RAP2-11	55	114	-	-
	Trre16g04170	196	SMART	rav1_2	56	119	IPR001471	GO:0003700\|GO:0006355
	Trre16g04170	196	Pfam	AP2 domain	56	105	IPR001471	GO:0003700\|GO:0006355
	Trre16g04170	196	MobiDBLite	consensus disorder prediction	8	24	-	-
	Trre16g04170	196	Gene3D	AP2/ERF domain	55	114	IPR036955	GO:0003700\|GO:0006355
	Trre16g04170	196	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g04170	Trre-Chr16	46613139	46614510	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g04170	41	114	AP2-EREBP Transcription Factor Family	AT5G19790	61.333	4.77e-26	99.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g04170	-		K09286	gmx:100807374	243.047