Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04169 ATGGCAATGGAGATTACTGCTATGGCTTCACTACCAACAACAACAACAAGAACTTCACTTCCAACTCCTTCAACTTCACCTCACACAATCACCACCTTCTCAAAACCTCTATTTAGACGCATATCATTACCAACTTCAACCACCATTTCACTACTTTCTCTCTTCACTATTCCAAATGAAGCCAAAGCTGCTGTTAACATCTCCAAGGACCAAATTGTTTCTTCTATCACCCAAGTGGAGCAAACAATTGATCAGGTTCAAGAGGTAGGTTCTGGTTTTTTAGACTCAGCACAACGTGTTGCTGAAGCTATAGGGAGTGTTTTGAAGCCTGGAATCGATGCCGGGTTGCCAATTGTGCAACAGGCTGGGGAAGAAGCTTTGAAATTTGCTTCACCAGCTTTTTCTGAGGCTTCTAAGAAGGCTCAAGAAGCACTTCAAAGCTCTGGTCTTGATACTCAACCTGTTCTCACTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCCAGGCGATTGAAGGTGCCAAGCCGATAGCCTCGTCAACCATCCAAACCATATCTACTTCAGATCCTACTGTGATTGCTGGAACAGCTGGTGCACTATTTGTTGCATATCTCTTGTTTCCTCCAATCTGGTCTGCCATTTCCTTCAACTTTCGTGGTTACAAAGGAGACCTGACACCAGCTCAAACACTTGATGTGTTATGCACACAAAACTACGTTTTGATTGATGTTAGGTCAGAGAAGGATAAGGACAAATCCGGTATCCCCCGGCTTCCATCTAGCGCTAAAAACAAGATGGTTGCTATTCCATTGGAAGAAGTGCCAAGCAAGATAAGAGGACTAGTGAGGAATGTGAAGAGAGTGGAAGCTGAAATAGCAGCATTAAAGATTTCATATCTGAAGAAAATCAACAAAGGCTCAAACATTGTTATATTGGACTCGTACTCGGACTCGGCAAAGATAGTTGCAAGAACGCTAACCGGGCTTGGATTTAAGAACACATGGATAGTTGGTGATGGATTTTCCGGAGGCAAAGGGTGGTTACAAAGTAGATTAGGAACGGATTCGTATAAATTTTCATTTGCAGAGATCTTGTCTCCATCAAGAATCATCCCTGCAGGTGGTACTAGAAGTTTTGGAACAACCAGAGGGCAATCTAGTCAGAAACTTCTTCCTGACTGA 1188 0.4327 MAMEITAMASLPTTTTRTSLPTPSTSPHTITTFSKPLFRRISLPTSTTISLLSLFTIPNEAKAAVNISKDQIVSSITQVEQTIDQVQEVGSGFLDSAQRVAEAIGSVLKPGIDAGLPIVQQAGEEALKFASPAFSEASKKAQEALQSSGLDTQPVLTAAKTVADAAQQTTQAIEGAKPIASSTIQTISTSDPTVIAGTAGALFVAYLLFPPIWSAISFNFRGYKGDLTPAQTLDVLCTQNYVLIDVRSEKDKDKSGIPRLPSSAKNKMVAIPLEEVPSKIRGLVRNVKRVEAEIAALKISYLKKINKGSNIVILDSYSDSAKIVARTLTGLGFKNTWIVGDGFSGGKGWLQSRLGTDSYKFSFAEILSPSRIIPAGGTRSFGTTRGQSSQKLLPD 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04169 395 Coils Coil 280 300 - -
Trre16g04169 395 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 45 358 IPR044690 GO:0009704|GO:0071277|GO:0090333
Trre16g04169 395 MobiDBLite consensus disorder prediction 8 28 - -
Trre16g04169 395 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 203 345 IPR036873 -
Trre16g04169 395 Gene3D - 225 363 IPR036873 -
Trre16g04169 395 ProSiteProfiles Rhodanese domain profile. 237 358 IPR001763 -
Trre16g04169 395 MobiDBLite consensus disorder prediction 1 28 - -
Trre16g04169 395 CDD RHOD 231 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04169 Trre-Chr16 46602983 46605704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04169 3 316 Sulfurtransferasese or Rhodanese AT5G23060 66.352 2.60e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04169 - - gmx:100813363 546.584