Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04157 ATGGGGAGCGACGGCGAAGGTGAGAAATCGGCGCAGAAAGAGATTGAAAGGAAGAAGATTCTTGCGTTAGCTCCCATTGCAAAACCTCTTGCTGGGAAGAAACTTTCCAAGAAAACACTCAAGCTTGTTAAAAGAGCTGCTGAAAACAAGTGCATAAAGAGAGGGGTTAAGGAAGTGGTCAAAAGTATAAGGCGAGGTCAAAAGGGAGTGTGTGTTATAGCTGGGAACATATCGCCAATTGATGTCATCACTCATGTTCCTGTTCTATGCGAAGAAGCTGACATTCCATATGTATATGTCCCATCTAAAGAAGACCTTGCATCTGCAGGAGCAACAAAGAGGCCTACATGTTGTGTTTTAGTGATGACCAAACCTTCAAAGGGTGAACTAGCTCAAGAGGCACAAGAAAAACTAAAGTCAGAGTACGATCAAGTTGCATCTGAAATCACTGAGCTAACAACATCACTTTTTTGA 474 0.4262 MGSDGEGEKSAQKEIERKKILALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCVIAGNISPIDVITHVPVLCEEADIPYVYVPSKEDLASAGATKRPTCCVLVMTKPSKGELAQEAQEKLKSEYDQVASEITELTTSLF 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04157 157 SUPERFAMILY L30e-like 19 140 IPR029064 -
Trre16g04157 157 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Trre16g04157 157 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Trre16g04157 157 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
Trre16g04157 157 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Trre16g04157 157 FunFam H/ACA ribonucleoprotein complex subunit NHP2 20 152 - -
Trre16g04157 157 Gene3D - 9 153 IPR029064 -
Trre16g04157 157 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Trre16g04157 157 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Trre16g04157 157 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Trre16g04157 157 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
Trre16g04157 157 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 19 147 - -
Trre16g04157 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 39 123 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04157 Trre-Chr16 46540394 46542095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04157 52 124 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.767 5.26e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04157 K11129 - oeu:111397338 256.144