Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04156 ATGGCACAAGAAACCGTTTCTGGTGCTGAATCTCCACAGCGTCGTCAAGGTTTATTACGAGATCAAGTTCAACTTGTTAAAAGAAAGGATTCATCATCTGATCGTTATGAAATTGTTCCAATTCAAGATTCTTTATCTTTTGAGAAAGGATTCTTCATTGTTATTCGTGCTTGTCAGTTATTGGCTCAAAATAACGATGGAATTGTTTTAGTTGGAGTTGCTGGTCCTTCTGGTGCTGGCAAAACTGTTTTTACTGATAAGGTTTTCAGTTTTATGCCGAGTATTGCTGTTATATCCATGGATAATTATAATGATGCTAGTCGAATCATTGATGGAAACTTTGATGACCCTCGATTGACGGATTATGATACCTTGCTAAAAAATATACAGGATCTTAAATCAGGGAAGCCTGTTCAGGTTCCGATATATGATTTCAAGTCTAGTTCTCGCATCGGATACAGGACTATTGAAGTCCCTAGCTCCCGTATTGTAATCATTGAAGGCATCTATGCCTTAAGTGAGAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAATTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCAACGAGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTAAAAACAGCGCATATAAAAATTATTAACAAGTTTAATCCATTCACTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAAAGATGTGACAGTGGATCAAATCAAGGCAGTTGTTGCTTCAGAGCATACTGAAACCAATGAGGAAACATATGACATATATCTTCTACCCCCTGGAGAAGACCCTGAAGCATGTCAATCATATTTGAGAATGAGAAACAGGGATGGGAAGTACAATCTTATGTTTGAGGAATGGGTTACGGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGCCTGCTTGGAGGGCTGATGGCCTTGGGGTATACAATTGCGGCAATCCTGAAAAGAAGCAGCCATGTCTTTCACGATGATAAAGTGTCCATAAAAACTGATTGGCTAGAACAACTTAATCGCCAATATGTCCAGGTACAAGGGAAAGATAGAAACTATGTTAAATTTGTGGCGGAGAAACTGGGTTTGGGTGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAACTAGAAAAGCTTGTAAATGATGTGATGACACTGCCAGATGATCTGAAGACAAAACTCAGCATAGAAGATGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCCAGAGCGTCTGCAGATAGGAGAATGAAATATCTTAATCGTGGTGTTTCACAGTCATATTCAAATCAAAGGGACAAAATTCTACCTAAGTTGACTAAACTTGCTATAAATAACAGAAGTTTTAATGGGAGAGCTCTAGAATCACCTGCTCCGATGGCCAATCAAGGAGTTATCATTCAACTTTCTGATCAAATTTCCACACTAAATGAAAGAATGGATGAGTTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTTGATGTTAAAAAAGCTTCAGCGAGTCAACAAAACTTGGCTTTACAGGCTGAGGCCTGCAATGGCTCTGGCCCCACTTCTTTCTTTGTTACTGGATTAGGAAATGGTTCATTAACTGCTGGATCATTGCTTCCTCATTCTACATCATCCTCTCAACTGGTTAGAGAGTCTCCCCTGATGGAAGAGGTATTGCTTGTTGCACGAGGACAGCGTCAAATCATGCATCAACTAGACACTCTGAGCAATCTTATGCACGAATACTTCGGAGAAAGATCACGGCCAGGAAGAACAGACCAGGCAGGCAGAGTGCGTGAAGTTGAATCTGTTGCTGTCCCCCTGGTTCTGACTTTGGCCATCGGTGCTGTTGGTGTGCTCTTGTTCAAGGGTTTGACATCTAAAAAATAA 1995 0.4025 MAQETVSGAESPQRRQGLLRDQVQLVKRKDSSSDRYEIVPIQDSLSFEKGFFIVIRACQLLAQNNDGIVLVGVAGPSGAGKTVFTDKVFSFMPSIAVISMDNYNDASRIIDGNFDDPRLTDYDTLLKNIQDLKSGKPVQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGIHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKIINKFNPFTGFQNPTYILKSAKDVTVDQIKAVVASEHTETNEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVSIKTDWLEQLNRQYVQVQGKDRNYVKFVAEKLGLGGSYVPRTYIEQIQLEKLVNDVMTLPDDLKTKLSIEDDLVSSPKEALSRASADRRMKYLNRGVSQSYSNQRDKILPKLTKLAINNRSFNGRALESPAPMANQGVIIQLSDQISTLNERMDEFTSRIEELNSKFDVKKASASQQNLALQAEACNGSGPTSFFVTGLGNGSLTAGSLLPHSTSSSQLVRESPLMEEVLLVARGQRQIMHQLDTLSNLMHEYFGERSRPGRTDQAGRVREVESVAVPLVLTLAIGAVGVLLFKGLTSKK 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04156 664 Gene3D - 69 252 IPR027417 -
Trre16g04156 664 CDD UMPK_like 70 242 - -
Trre16g04156 664 ProSiteProfiles CYTH domain profile. 248 413 IPR023577 -
Trre16g04156 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 239 IPR027417 -
Trre16g04156 664 SUPERFAMILY CYTH-like phosphatases 263 410 IPR033469 -
Trre16g04156 664 PANTHER URIDINE KINASE 17 426 - -
Trre16g04156 664 Gene3D - 256 416 - -
Trre16g04156 664 Coils Coil 503 530 - -
Trre16g04156 664 PRINTS Uridine kinase signature 135 150 - -
Trre16g04156 664 PRINTS Uridine kinase signature 68 85 - -
Trre16g04156 664 PRINTS Uridine kinase signature 191 201 - -
Trre16g04156 664 PRINTS Uridine kinase signature 227 240 - -
Trre16g04156 664 Pfam CYTH domain 271 407 IPR023577 -
Trre16g04156 664 Pfam Phosphoribulokinase / Uridine kinase family 71 239 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04156 Trre-Chr16 46531553 46538567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04156 70 239 PRT Gene Family AT5G40870 29.050 4.63e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04156 K00876 - gmx:100803122 1159.05