Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04147 ATGGCTGATGTTACCTATCTACGTCACCACCACAAACCCGACGATGATCAAACCCTAATCCCTTTACCATATTGGTCTTCCCCTTCCGATTTCGATTTCGATTTTGATTTATACTCTTCTGATCCCGAATTCCCTCCCAATCACAACCACCACCACCACCACCACTTTTCTCGTGAGAATTTCGTCATGGATCTCTTTCAACAACGCGTCGAGCAATCTCATGTCATCGATCATGCCAATCCTGTACATCAATCGCTAAACGACTCTTTTTTCGATAGTTTAAGTCTCGATTTAGGGTTCAATATTGCCGATTTCAATTTCGGTATCCATAACAACGTTGATGATGACGACGATGATTTTCCTGATATGAGGGTTTCTGGATCATATCCAATTAACGGTTTGCGTATTGTTGAAATTGATTCGGATTCCGATTGTGAAGAAGATGTTGAAGGAAATAATGTGTTTTACGGGATGTGTGTGCATTCTGATGAAGAAGATTTTAATAACGATGAAGTTACGAATTTTCCTCTCCGTTGGGATTCGCTTCAGTTGGAGGATAATCAAATATATGAAGATTTTGAGTGGGAGGAAGTTGACGGTGGCTTAGACGCAAGGGATCTTCTTCACATGCTTGCTCTTGAAGACAATAATAGGCCGGTTAATTCCGATCACGCCACTCCGTTTATTGAAGAAGATGTAGAAGATGGAGAAGAGGTTAACATGACGATGGTTGGCGGAGGAATGGAAAATCTTGAGTGGCAAATATTGTTGAATTCGGATTCTGATAATATAGGCACAAGCCCTGAAACTTATCATGTAATTGCAGAGCCTTTTGGGGATAATGATGATTACATTTACACTGCACAGTATGAAATGATGTTTAATGATAACCCGTTAACCGGTAGGCCTCCGGCTTCTGTAGCCGTTGTTCAGAACCTTCCTAATGAGGTTGTGACCAAAGATGATGTGGAGAATAACAATACTTTGTGTGCGGTTTGTAAAGATGAATTTTCTGTTGGAGAAGGGGTGAAGTTGTTGCCGTGTTCTCATCGTTACCATGGTGATTGTATTGTTCCTTGGTTGGGGATTAGGAATACTTGTCCTGTTTGTCGATACGAGTTCCCCACTGATGATGCTGATTATGAACGGTTAGGGTTGGATGACAACTGGAGTTCAGGTTTATGGCTTCCCTGTTTTTACAGGTTAGACACGGCTCCCATAGCAATAACATATTTTGGTTCGGGCATTAGTAATTCGATCATTTCCAGAAAAAAGAGTGAAGTAAATCATCGCACCTACGGTCCATCCAATTGGGAGAGAATCAATAGATTCCTTTTCGGGAGCGATTCATCTTGTGTCTTTATGTCACTTACTCCCTCAACCAGTTTGCAGAGCAAAAGGTTGCAAATGAGAAAGAAGCAACAAATTGAAGTCCTGCAATATCAAAAGGACACGATTAGCGCTGTAGAGTATAAACAATTGAGTGTGGAATCTGATGCAAAGACACTTTTAGCATGA 1518 0.4111 MADVTYLRHHHKPDDDQTLIPLPYWSSPSDFDFDFDLYSSDPEFPPNHNHHHHHHFSRENFVMDLFQQRVEQSHVIDHANPVHQSLNDSFFDSLSLDLGFNIADFNFGIHNNVDDDDDDFPDMRVSGSYPINGLRIVEIDSDSDCEEDVEGNNVFYGMCVHSDEEDFNNDEVTNFPLRWDSLQLEDNQIYEDFEWEEVDGGLDARDLLHMLALEDNNRPVNSDHATPFIEEDVEDGEEVNMTMVGGGMENLEWQILLNSDSDNIGTSPETYHVIAEPFGDNDDYIYTAQYEMMFNDNPLTGRPPASVAVVQNLPNEVVTKDDVENNNTLCAVCKDEFSVGEGVKLLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERLGLDDNWSSGLWLPCFYRLDTAPIAITYFGSGISNSIISRKKSEVNHRTYGPSNWERINRFLFGSDSSCVFMSLTPSTSLQSKRLQMRKKQQIEVLQYQKDTISAVEYKQLSVESDAKTLLA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04147 505 Pfam Ring finger domain 330 371 IPR001841 -
Trre16g04147 505 SUPERFAMILY RING/U-box 316 377 - -
Trre16g04147 505 SMART ring_2 330 370 IPR001841 -
Trre16g04147 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 377 IPR013083 -
Trre16g04147 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 215 375 - -
Trre16g04147 505 FunFam E3 ubiquitin-protein ligase RING1-like 291 377 - -
Trre16g04147 505 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04147 Trre-Chr16 46456076 46461088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04147 17 377 C3H Transcription Factor Family AT5G60820 35.122 2.21e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04147 - - mtr:25493924 509.99