Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04146 ATGTCGACTCCATTAGCTACCTCAAAGAAACGCCCAAAATCCGAACAGGAATCTGAAGAAAACGACGATGATTGCTGCGGAATTTGCTACATGGAACGCGGAGTTCCAGTCCCGGGTAAAATTGATTCATGCAACCACTATTTTTGCTTCGTTTGCATCATGGAATGGGCGAAACACGAATCTCGATGCCCAATTTGTCGCCAGAGATTCTTAAACGTTCGTAGACTCCCTAAGCATGGCGTTTTTTCTTACTATCGGGATATTAAGGTCCCTATTCGTGACCAGGTTTATCATCCTCATGGAAATATGACAACTGGTCCTGTTGATTCTAATGCCGAACTCAAATGCGGTATTTGCGATGTCACGAAAGATGACAATCTTATAATAATATGTGATCTTTGTGATACTGCTTCCCATACATATTGTGTTGGCTTGGGCTACACCGTTCCTGAAGGCGATTGGTTTTGTCATGATTGTGCTGCTGCTGCCCGGGAGACTAATGCTAATGACGGGTTAGACCAACAAAATGTTAAGCTAATGGCTGAGCCTGGTGTAGCCATCTTAGATAATGTGAGAGGAACAAGCAGCCAAGTGTTCAGAAGACCAATGGCATCTCCTATACGACTAAACAATCATCCGTCTTCTAGTATTCCTTTACTTAATAGAGTGAGTAGATCTGAAGGTAAAAAACCTATGTCGGACGTCCAGCGTGCGAAACATAAGGTTCAGATGCTTCGTGAAAATTGGAATTCTTTAAGAAGTGGTAAATTAAGGTTCAATAGCAAATCCTTTCAATCTGGTGGCACAAGTAGTCAAAAAGAAGATTCTAGTTCTTTATCACATGGCAAATTAGATGATTCACATTCAATGGCTTCCAAAGGCTGTCCACAATCCACAGTCCAAGGTGCTCAATCTAGTAACATGTTGACTAATCATGGCTTGGAAGACGATGTACGCAAAGCTTGGAAGATGTGGGATAAGGTAAAGATGACGAAACAGACTCCTAGAAGACCTAGCAGCATTCCACAGGCAGTGGATAATGATCCTCCATGTAGTGATGCTAGAGAAAAATCATCTGCACCTCGTAGTTTCCCAGAATTGAAAAACCAACAGCCCAGAACATTAGACTTTAGGCACATCAGAATGGAAGAGCAGCGTGACTATTCTAGTGTCCAAAAAAATTTGGAAAATCACCGGTCTCCAATATTGGGAGAGAAAAGGCAAAGTAGGGTCACATGTGACGAGATGCTACAACATGCGAGGAACAATACTACTCATTCAGAAGGATACAGGGAATGTGCATTGCCTGGAAAGGCCCATACTAGTACCCACAGTGCTCCTTGTCACGGAGAAAGAAATGTTGCAAAGGAACAAAGACAGTCTGCTAACTTGGTAACTTCAGTAGGCTCAGCACCCTCTAGTGGCCAATCTGGCCGTGTCTTCACCTCTAATAAGGATACGGATATTTTCAATAAAGAAAAGAGGTTGGCCAAAAGCTTTGGGAATGGGATCACGAAAAATATTGAGGATGCAAAAACAGAGATCCAGTCTCTTGTTAAACTGAATCTGAAGTGCTTAACTAGAGATACACAATTAGGTGTCGAAACCTTCAAGGTAGTTGCAAGGCAAGCCACCCATACCATCTTGGCTGCTTGCCATTCAGAGTACTCCTCAAACTCAGTATGCAGCCACACTGACAATATTCTACAGTTTCCAAAGTCAAATTTAATGCCCAATAGTTGCCGACAATGCTTTAATATCTTTGTAAATGATGTTGTCAAGTCCATTATGTTGGAAAAAGTAGGTTGTTCTTGA 1815 0.4209 MSTPLATSKKRPKSEQESEENDDDCCGICYMERGVPVPGKIDSCNHYFCFVCIMEWAKHESRCPICRQRFLNVRRLPKHGVFSYYRDIKVPIRDQVYHPHGNMTTGPVDSNAELKCGICDVTKDDNLIIICDLCDTASHTYCVGLGYTVPEGDWFCHDCAAAARETNANDGLDQQNVKLMAEPGVAILDNVRGTSSQVFRRPMASPIRLNNHPSSSIPLLNRVSRSEGKKPMSDVQRAKHKVQMLRENWNSLRSGKLRFNSKSFQSGGTSSQKEDSSSLSHGKLDDSHSMASKGCPQSTVQGAQSSNMLTNHGLEDDVRKAWKMWDKVKMTKQTPRRPSSIPQAVDNDPPCSDAREKSSAPRSFPELKNQQPRTLDFRHIRMEEQRDYSSVQKNLENHRSPILGEKRQSRVTCDEMLQHARNNTTHSEGYRECALPGKAHTSTHSAPCHGERNVAKEQRQSANLVTSVGSAPSSGQSGRVFTSNKDTDIFNKEKRLAKSFGNGITKNIEDAKTEIQSLVKLNLKCLTRDTQLGVETFKVVARQATHTILAACHSEYSSNSVCSHTDNILQFPKSNLMPNSCRQCFNIFVNDVVKSIMLEKVGCS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04146 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 172 IPR013083 -
Trre16g04146 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
Trre16g04146 604 SMART PHD_3 115 160 IPR001965 -
Trre16g04146 604 SMART ring_2 26 66 IPR001841 -
Trre16g04146 604 SUPERFAMILY FYVE/PHD zinc finger 108 161 IPR011011 -
Trre16g04146 604 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Trre16g04146 604 SUPERFAMILY RING/U-box 16 82 - -
Trre16g04146 604 MobiDBLite consensus disorder prediction 330 374 - -
Trre16g04146 604 MobiDBLite consensus disorder prediction 259 277 - -
Trre16g04146 604 MobiDBLite consensus disorder prediction 206 241 - -
Trre16g04146 604 MobiDBLite consensus disorder prediction 208 222 - -
Trre16g04146 604 PANTHER F18C1.6 PROTEIN 9 601 - -
Trre16g04146 604 MobiDBLite consensus disorder prediction 259 312 - -
Trre16g04146 604 MobiDBLite consensus disorder prediction 291 312 - -
Trre16g04146 604 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g04146 604 Pfam PHD-finger 116 160 IPR019787 -
Trre16g04146 604 Pfam Ring finger domain 25 67 IPR001841 -
Trre16g04146 604 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Trre16g04146 604 MobiDBLite consensus disorder prediction 227 241 - -
Trre16g04146 604 ProSiteProfiles Zinc finger PHD-type profile. 113 162 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04146 Trre-Chr16 46444346 46452157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04146 87 164 C2H2 Transcription Factor Family AT3G01460 34.177 8.74e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre16g04146 PHD 1.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04146 - - tpra:123885278 1065.83