Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04142 ATGGAGCTTCCTCAATCACGTCCGTGTGGAGCCGAAGGGAGGAAACCGACGCATGATTTTCTGTCGCTCTACAGTAATCAAACTGCTGAACAAGATCCAAGGCCATCTGCTCAAGCTAGTTACCTCAAGACTCATGATTTCTTGCGGCCACTAGAACAAGTAGAAACAAAATCTGATACCAAGGAAGAAGCCACTGATGAAATCTCATCCGTTGTTCAGAAGCAACCACCGCCTTTAGCAACACCAGCTTCAGTTGAGCACATCTTACCTGGAGGAATTGGGACTTACAGTATCAGCCACATTAATTCCTACGTCAATAACAATAATCAAAGGATTCCAAAGCCAGAAGCATCACTTTTCAGTGTGCATCAAGCAACCAGTGCGGATAGAAACGATGACAACTCCAACTGCAGTTCACATACGTCAAGCGGTTTCACATTGTGGGAAGAGTCTGACATTAAAAAGGGAAAGACAGGGAAAGAGAATATTGTTGGCGAGAAACCCATTATAGGAGTGGCAGATTCTGCTGCTAAGCTGGGGCAGTGGACATTGACGGAGCGAACATCTCAATCGTTTTCTAACAATCGTCATGGCAGCTTCAACTCCCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACCTTTTTTCTCAAGAGAGAATCCTCCAATACTCAAAGGGGAGAACTAAGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAACAGAGGAGAAGAAGCAAAATTAATGACAGGCAACCACCCTTTTACTGGGGCTGGGATTGTCGGACTTTGGTGAGTGCTCTGTATAAGCAGGTACATTATAGGGCATTGTTTCAAATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGCAGAGAAATAATGACCGGCCAGCAGAAAGTTTTCAACCTCGTGGCACAAACAGCGGGCCCAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGATGAGAAAAATACCACCATCTCCCCAACAATTCATGGGGGCGCCCATAATCTGGAATCTGGCTTGACCACACCAACTGCCTTCAAGACAATGGATTATCAGTCTGGAATAATGAATAAGGCTCTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTTCATCCCAAATTGGTGGTTCTGGTGGAGTAGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACACAATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTCAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACACTTACACAAGCCTTGCAGAGTTCAGGAGTGGATTTATCACAAGCTAACATTTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAGCCTCAGACCAAACGTACCGATGTCAATGTGTGTTTCTAAGGATGATGAAGATCCTTCTAAGAATCAAAGGAAGATACGGTCTAGAGTCACTGGCTCTGACAAGTCTGATCAAGCAGTAAAGAAGCTAAAGACATGCAGAAGTTAA 1791 0.431 MELPQSRPCGAEGRKPTHDFLSLYSNQTAEQDPRPSAQASYLKTHDFLRPLEQVETKSDTKEEATDEISSVVQKQPPPLATPASVEHILPGGIGTYSISHINSYVNNNNQRIPKPEASLFSVHQATSADRNDDNSNCSSHTSSGFTLWEESDIKKGKTGKENIVGEKPIIGVADSAAKLGQWTLTERTSQSFSNNRHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRESSNTQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRQPPFYWGWDCRTLVSALYKQVHYRALFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQSWNNEPEKLMPWQRNNDRPAESFQPRGTNSGPNPSPTLLFASKIDEKNTTISPTIHGGAHNLESGLTTPTAFKTMDYQSGIMNKALPIPISSQPNFFTSSQIGGSGGVVSQLRHRLASDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAISISSVYSKGLLDTLTQALQSSGVDLSQANISVQIELGKQASLRPNVPMSMCVSKDDEDPSKNQRKIRSRVTGSDKSDQAVKKLKTCRS 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04142 596 CDD bHLH_AtBIM_like 266 368 - -
Trre16g04142 596 Pfam Helix-loop-helix DNA-binding domain 312 344 IPR011598 GO:0046983
Trre16g04142 596 MobiDBLite consensus disorder prediction 364 391 - -
Trre16g04142 596 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 365 IPR036638 GO:0046983
Trre16g04142 596 MobiDBLite consensus disorder prediction 246 282 - -
Trre16g04142 596 MobiDBLite consensus disorder prediction 20 38 - -
Trre16g04142 596 MobiDBLite consensus disorder prediction 1 39 - -
Trre16g04142 596 MobiDBLite consensus disorder prediction 51 80 - -
Trre16g04142 596 MobiDBLite consensus disorder prediction 372 391 - -
Trre16g04142 596 MobiDBLite consensus disorder prediction 123 143 - -
Trre16g04142 596 MobiDBLite consensus disorder prediction 238 282 - -
Trre16g04142 596 MobiDBLite consensus disorder prediction 51 68 - -
Trre16g04142 596 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 593 IPR044295 GO:0003700|GO:0006351|GO:0046983
Trre16g04142 596 MobiDBLite consensus disorder prediction 553 596 - -
Trre16g04142 596 Gene3D - 264 365 IPR036638 GO:0046983
Trre16g04142 596 MobiDBLite consensus disorder prediction 188 214 - -
Trre16g04142 596 MobiDBLite consensus disorder prediction 562 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04142 Trre-Chr16 46365265 46372686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04142 1 549 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 46.655 9.70e-121 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g04142 HLH 3.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04142 - - gmx:100808016 844.343