Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04140 ATGGAGCTTCCTCAATCACGTCCGTGTGGAGCCGAAGGGAGGAAACCGACGCATGATTTTCTGTCGCTCTACAGTAATCAAACTGCTGAACAAGATCCAAGGCCATCTGCTCAAGCTAGTTACCTCAAGACTCATGATTTCTTGCGGCCACTAGAACAAGTAGAAACAAAATCTGATACCAAGGAAGAAGCCACTGATGAAATCTCATCCGTTGTTCAGAAGCAACCACCGCCTTTAGCAACACCAGCTTCAGTTGAGCACATCTTACCTGGAGGAATTGGGACTTACAGTATCAGCCACATTAATTCCTACGTCAATAACAATAATCAAAGGATTCCAAAGCCAGAAGCATCACTTTTCAGTGTGCATCAAGCAACCAGTGCGGATAGAAACGATGACAACTCCAACTGCAGTTCACATACGTCAAGCGGTTTCACATTGTGGGAAGAGTCTGACATTAAAAAGGGAAAGACAGGGAAAGAGAATATTGTTGGCGAGAAACCCATTATAGGAGTGGCAGATTCTGCTGCTAAGCTGGGGCAGTGGACATTGACGGAGCGAACATCTCAATCGTTTTCTAACAATCGTCATGGCAGCTTCAACTCCCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACCTTTTTTCTCAAGAGAGAATCCTCCAATACTCAAAGGGGAGAACTAAGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAACAGAGGAGAAGAAGCAAAATTAATGACAGGTTTCAAATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGAGAAATAATGACCGGCCAGCAGAAAGTTTTCAACCTCGTGGCACAAACAGCGGGCCCAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGATGAGAAAAATACCACCATCTCCCCAACAATTCATGGGGGCGCCCATAATCTGGAATCTGGCTTGACCACACCAACTGCCTTCAAGACAATGGATTATCAGTCTGGAATAATGAATAAGGCTCTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTTCATCCCAAATTGGTGGTTCTGGTGGAGTAGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACACAATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTCAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACACTTACACAAGCCTTGCAGAGTTCAGGAGTGGATTTATCACAAGCTAACATTTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAGCCTCAGACCAAACGTACCGATGTCAATGTGTGTTTCTAAGGATGATGAAGATCCTTCTAAGAATCAAAGGAAGATACGGTCTAGAGTCACTGGCTCTGACAAGTCTGATCAAGCAGTAAAGAAGCTAAAGACATGCAGAAGTTAA 1710 0.4281 MELPQSRPCGAEGRKPTHDFLSLYSNQTAEQDPRPSAQASYLKTHDFLRPLEQVETKSDTKEEATDEISSVVQKQPPPLATPASVEHILPGGIGTYSISHINSYVNNNNQRIPKPEASLFSVHQATSADRNDDNSNCSSHTSSGFTLWEESDIKKGKTGKENIVGEKPIIGVADSAAKLGQWTLTERTSQSFSNNRHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRESSNTQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQSWNNEPEKLMPWRNNDRPAESFQPRGTNSGPNPSPTLLFASKIDEKNTTISPTIHGGAHNLESGLTTPTAFKTMDYQSGIMNKALPIPISSQPNFFTSSQIGGSGGVVSQLRHRLASDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAISISSVYSKGLLDTLTQALQSSGVDLSQANISVQIELGKQASLRPNVPMSMCVSKDDEDPSKNQRKIRSRVTGSDKSDQAVKKLKTCRS 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04140 569 FunFam BHLH domain class transcription factor 265 337 - -
Trre16g04140 569 MobiDBLite consensus disorder prediction 20 38 - -
Trre16g04140 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 339 IPR036638 GO:0046983
Trre16g04140 569 SMART finulus 273 323 IPR011598 GO:0046983
Trre16g04140 569 MobiDBLite consensus disorder prediction 1 39 - -
Trre16g04140 569 MobiDBLite consensus disorder prediction 123 143 - -
Trre16g04140 569 MobiDBLite consensus disorder prediction 51 80 - -
Trre16g04140 569 MobiDBLite consensus disorder prediction 336 362 - -
Trre16g04140 569 Gene3D - 264 339 IPR036638 GO:0046983
Trre16g04140 569 MobiDBLite consensus disorder prediction 51 68 - -
Trre16g04140 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Trre16g04140 569 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 566 IPR044295 GO:0003700|GO:0006351|GO:0046983
Trre16g04140 569 MobiDBLite consensus disorder prediction 246 283 - -
Trre16g04140 569 CDD bHLH_AtBIM_like 266 342 - -
Trre16g04140 569 MobiDBLite consensus disorder prediction 188 214 - -
Trre16g04140 569 MobiDBLite consensus disorder prediction 535 569 - -
Trre16g04140 569 MobiDBLite consensus disorder prediction 238 283 - -
Trre16g04140 569 Pfam Helix-loop-helix DNA-binding domain 269 318 IPR011598 GO:0046983
Trre16g04140 569 MobiDBLite consensus disorder prediction 527 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04140 Trre-Chr16 46365265 46372686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04140 1 522 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.614 1.12e-125 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g04140 HLH 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04140 - - gmx:100808016 863.218