Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04139 ATGGAGCTTCCTCAATCACGTCCGTGTGGAGCCGAAGGGAGGAAACCGACGCATGATTTTCTGTCGCTCTACAGTAATCAAACTGCTGAACAAGATCCAAGGCCATCTGCTCAAGCTAGTTACCTCAAGACTCATGATTTCTTGCGGCCACTAGAACAAGTAGAAACAAAATCTGATACCAAGGAAGAAGCCACTGATGAAATCTCATCCGTTGTTCAGAAGCAACCACCGCCTTTAGCAACACCAGCTTCAGTTGAGCACATCTTACCTGGAGGAATTGGGACTTACAGTATCAGCCACATTAATTCCTACGTCAATAACAATAATCAAAGGATTCCAAAGCCAGAAGCATCACTTTTCAGTGTGCATCAAGCAACCAGTGCGGATAGAAACGATGACAACTCCAACTGCAGTTCACATACGTCAAGCGGTTTCACATTGTGGGAAGAGTCTGACATTAAAAAGGGAAAGACAGGGAAAGAGAATATTGTTGGCGAGAAACCCATTATAGGAGATTCTGCTGCTAAGCTGGGGCAGTGGACATTGACGGAGCGAACATCTCAATCGTTTTCTAACAATCGTCATGGCAGCTTCAACTCCCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACCTTTTTTCTCAAGAGAGAATCCTCCAATACTCAAAGGGGAGAACTAAGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAACAGAGGAGAAGAAGCAAAATTAATGACAGGCAACCACCCTTTTACTGGGGCTGGGATTGTCGGACTTTGGTGAGTGCTCTGTATAAGCAGGTACATTATAGGGCATTGTTTCAAATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGAGAAATAATGACCGGCCAGCAGAAAGTTTTCAACCTCGTGGCACAAACAGCGGGCCCAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGATGAGAAAAATACCACCATCTCCCCAACAATTCATGGGGGCGCCCATAATCTGGAATCTGGCTTGACCACACCAACTGCCTTCAAGACAATGGATTATCAGTCTGGAATAATGAATAAGGCTCTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTTCATCCCAAATTGGTGGTTCTGGTGGAGTAGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACACAATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTCAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACACTTACACAAGCCTTGCAGAGTTCAGGAGTGGATTTATCACAAGCTAACATTTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAGCCTCAGACCAAACGTACCGATGTCAATGTGTGTTTCTAAGGATGATGAAGATCCTTCTAAGAATCAAAGGAAGATACGGTCTAGAGTCACTGGCTCTGACAAGTCTGATCAAGCAGTAAAGAAGCTAAAGACATGCAGAAGTTAA 1782 0.4299 MELPQSRPCGAEGRKPTHDFLSLYSNQTAEQDPRPSAQASYLKTHDFLRPLEQVETKSDTKEEATDEISSVVQKQPPPLATPASVEHILPGGIGTYSISHINSYVNNNNQRIPKPEASLFSVHQATSADRNDDNSNCSSHTSSGFTLWEESDIKKGKTGKENIVGEKPIIGDSAAKLGQWTLTERTSQSFSNNRHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRESSNTQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRQPPFYWGWDCRTLVSALYKQVHYRALFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQSWNNEPEKLMPWRNNDRPAESFQPRGTNSGPNPSPTLLFASKIDEKNTTISPTIHGGAHNLESGLTTPTAFKTMDYQSGIMNKALPIPISSQPNFFTSSQIGGSGGVVSQLRHRLASDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAISISSVYSKGLLDTLTQALQSSGVDLSQANISVQIELGKQASLRPNVPMSMCVSKDDEDPSKNQRKIRSRVTGSDKSDQAVKKLKTCRS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04139 593 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 363 IPR036638 GO:0046983
Trre16g04139 593 MobiDBLite consensus disorder prediction 20 38 - -
Trre16g04139 593 MobiDBLite consensus disorder prediction 186 212 - -
Trre16g04139 593 Pfam Helix-loop-helix DNA-binding domain 310 342 IPR011598 GO:0046983
Trre16g04139 593 MobiDBLite consensus disorder prediction 1 39 - -
Trre16g04139 593 MobiDBLite consensus disorder prediction 123 143 - -
Trre16g04139 593 MobiDBLite consensus disorder prediction 51 80 - -
Trre16g04139 593 MobiDBLite consensus disorder prediction 51 68 - -
Trre16g04139 593 MobiDBLite consensus disorder prediction 360 386 - -
Trre16g04139 593 CDD bHLH_AtBIM_like 264 366 - -
Trre16g04139 593 MobiDBLite consensus disorder prediction 559 593 - -
Trre16g04139 593 MobiDBLite consensus disorder prediction 244 280 - -
Trre16g04139 593 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 590 IPR044295 GO:0003700|GO:0006351|GO:0046983
Trre16g04139 593 Gene3D - 262 363 IPR036638 GO:0046983
Trre16g04139 593 MobiDBLite consensus disorder prediction 551 593 - -
Trre16g04139 593 MobiDBLite consensus disorder prediction 236 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04139 Trre-Chr16 46365265 46372686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04139 1 546 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 46.290 5.74e-119 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g04139 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04139 - - gmx:100808016 842.417