Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04131 ATGCAGGAAATACATTCCATCGGAGGCGGCGGCGGAACCAGGTTTTTCGGTGGCGGTGACCGGAGACTCAGACCAAACCAAAACAACAACAACAACCAGACCCAACCAGTCTTGAAATGTCCTCGCTGTGAATCCATCAACACAAAATTCTGTTACTATAACAACTATAACCTCTCTCAGCCACGTCACTTCTGCAAAAACTGTCGTCGTTATTGGACTAAAGGCGGTGTCCTCCGTAACGTCCCTGTCGGTGGCGGTTGTCGTAAATCTAAACGCTCAAGTAAGCCAAAACACTCTTCATCTTCGTCGGAAATCTCTGTTTTGCCGATGACTCCACCGGAGAACAAATCAAACTCTCACTCAAGCAGTGAGAGTTCTAGTCTCACCGCCGCGGCGGTGGCAGAGACTGTTTCAGAACAAAAACCGCCAAACTCTAACACGAAAATCAACACTGGTTTGGAGAATGATTCACTTGAACAAGGTTCAGGTGATTGCGGTATTTTCTCAGAGATCGCGAATTTTACAAGCTTGATCACTTCTTCCTCTAACGAAACATTACCGTTTGGATTCGGTAACGGTAACGGTAACGTTAACTGTCTCACCGATGCGTCGTCGTTTCAGTGGCAAAACCAGAAAGTGATGACCGTTACCGGCGGCGATCAACAGAGTCATCATGAAGATGCATTGAAGTTGTTACCGGAGAATATTGGTTCTGGATCGATGATGGACCATAGTATAGATTTCTCTTTGCTGCAGAGTAAAACTACCAACGGTGGATTTGGATCGTTGGACTGGCAAGGTGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAAGGTTACTGGAATCATACTCACTGGTCTGATCAGGATAATGACAATTCTACCCTCTTTCATCTTCCTTGA 915 0.4579 MQEIHSIGGGGGTRFFGGGDRRLRPNQNNNNNQTQPVLKCPRCESINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPKHSSSSSEISVLPMTPPENKSNSHSSSESSSLTAAAVAETVSEQKPPNSNTKINTGLENDSLEQGSGDCGIFSEIANFTSLITSSSNETLPFGFGNGNGNVNCLTDASSFQWQNQKVMTVTGGDQQSHHEDALKLLPENIGSGSMMDHSIDFSLLQSKTTNGGFGSLDWQGGADQGLFDLPNTVDQGYWNHTHWSDQDNDNSTLFHLP 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04131 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 212 IPR045174 GO:0003700|GO:0006355
Trre16g04131 304 MobiDBLite consensus disorder prediction 83 156 - -
Trre16g04131 304 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Trre16g04131 304 MobiDBLite consensus disorder prediction 99 156 - -
Trre16g04131 304 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Trre16g04131 304 MobiDBLite consensus disorder prediction 1 35 - -
Trre16g04131 304 Pfam Dof domain, zinc finger 37 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04131 Trre-Chr16 46307281 46308195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04131 20 304 C2C2-Dof Transcription Factor Family AT5G60850 40.256 7.84e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre16g04131 zf-Dof 9.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04131 - - mtr:25493917 395.971