Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04120 ATGGGGAGAGGAAGAGTGCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTCACTTTTTCAAAGAGAAGGTCTGGTTTGTTGAAGAAAGCACATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATAGTTTTCTCTACTAAAGGCAAGCTTTATGATTACTCCAGTGATCCTTGTATGGAAAGAATTCTCGAACGATACGAGAGATATTCTTATACGGAGAGGCAACTTGTTACAAATGATCAGTCACCAAATGAAAATTGGGTTCTAGAACATGCAAAACTGAAGGCTAGAATGGAAGTACTTCAAAGAAATCAAAGGAATTATATGGGAGAGGATTTGGATGGCTTAAGTCTCAAAGAGCTTCAGAATTTGGAACAACAACTTGATTCCTCTCTCAAACACATTAGATCACGAAAGAACCAAGTCATGTATGAATCTATTTCAGAACTTCAGAAAAAGGATAAGGCACTCCAGGAACACAACAACTTGCTTGCCAAGAAGATAAAGGAAAAAGAGAAAGAACTTGCTCAAGAGGAGCAGCAAAATAGTATGGAGATGAATCCAATTGAAATTCAACCATTGGAATCCATGGTAACTACTGCAGGAGGGTCCTTACAAGAGATATGTAATGAAGAAAATGCAGCACAAAATCAAGGTAGCACCATTCTTCCATCTTGGATGATTCGTCCTATAAATGAATAG 714 0.3796 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYDYSSDPCMERILERYERYSYTERQLVTNDQSPNENWVLEHAKLKARMEVLQRNQRNYMGEDLDGLSLKELQNLEQQLDSSLKHIRSRKNQVMYESISELQKKDKALQEHNNLLAKKIKEKEKELAQEEQQNSMEMNPIEIQPLESMVTTAGGSLQEICNEENAAQNQGSTILPSWMIRPINE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04120 237 Coils Coil 122 145 - -
Trre16g04120 237 Coils Coil 88 115 - -
Trre16g04120 237 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Trre16g04120 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre16g04120 237 Coils Coil 154 185 - -
Trre16g04120 237 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Trre16g04120 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Trre16g04120 237 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g04120 237 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Trre16g04120 237 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Trre16g04120 237 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g04120 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre16g04120 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g04120 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g04120 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g04120 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g04120 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04120 Trre-Chr16 46231156 46237658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04120 1 185 MADS-box Gene Family AT1G26310 66.845 2.73e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre16g04120 K-box 4.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04120 K09264 - gmx:100805348 324.709