Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04119 ATGCCCACAATAGTTACAACATGCATCCGTCCCTGGGGAAGAGGGAGAGTTGAATTAAAGAGAATAGAGAGCAAAATTAACAGACAAGTCACTTTTGCAAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATTTTCTCCAACCGTGGTAAGCTCTATGAATTCAGCAGCACCTCTTGCATGATGAAAACATTGGAGAAATACCACAAGTACAGCTACAGTGAATTGGAGACCAACCAACCAGCCAATACCACTCAGAATTACCAGGACTATGTGAGATTAAAAGCCAATATAGAAATCTTACAACGTTCCCAAAGGAACCTTCTTGGGGAAGATATTGCACAAATGAATACAACTGAGCTTGAGCAGCTTGAAAATCAATTGGAGGGAACACTTAAGAATATAAGATCAACAAAGACTCAAGTCATGGTTGATCAACTCGCCGATCTTCACAATCGGGAAACAGAGCTTGTTGAAACAAATAATGCTCTAAGAAGTAAGCTTGAAGAAACTGATCATAACTCACAAGTTCCAGATAGATCGTTGGCGGTTGGGTCTAATTTCCATCATACACGCTTTCATCCTCAATCAGATGGGTTTTTCCACCATGTGGGAGTGAATACCAACTTCCAATTTGGATACAATCCAATGGATTCTAATGATGTAAATGTTGGAGCTTCATCCTTAAGTAAGAATGGATTCGCCTCTATGACATGGGCACTTTGA 765 0.4 MPTIVTTCIRPWGRGRVELKRIESKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYSELETNQPANTTQNYQDYVRLKANIEILQRSQRNLLGEDIAQMNTTELEQLENQLEGTLKNIRSTKTQVMVDQLADLHNRETELVETNNALRSKLEETDHNSQVPDRSLAVGSNFHHTRFHPQSDGFFHHVGVNTNFQFGYNPMDSNDVNVGASSLSKNGFASMTWAL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04119 254 Gene3D - 25 106 IPR036879 GO:0003677|GO:0046983
Trre16g04119 254 ProSiteProfiles K-box domain profile. 97 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g04119 254 FunFam MADS-box transcription factor 1 24 100 - -
Trre16g04119 254 SUPERFAMILY SRF-like 13 102 IPR036879 GO:0003677|GO:0046983
Trre16g04119 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Trre16g04119 254 Pfam K-box region 96 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g04119 254 CDD MADS_MEF2_like 13 89 IPR033896 GO:0000977|GO:0045944
Trre16g04119 254 Coils Coil 127 154 - -
Trre16g04119 254 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Trre16g04119 254 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Trre16g04119 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 175 - -
Trre16g04119 254 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Trre16g04119 254 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Trre16g04119 254 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Trre16g04119 254 ProSitePatterns MADS-box domain signature. 14 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04119 Trre-Chr16 46213797 46220789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04119 13 226 MADS-box Gene Family AT5G15800 57.273 1.47e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre16g04119 K-box 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04119 K09264 - gmx:100797819 345.895