Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04118 ATGGAATCTTGGAGTTATATCTCTGAAGAAAAGGGTTATGTCTCTAATGAGAATCAAGGTTCTGAAGAAATGGGTTTTTGTGAAATTTTAGGGAAACAATTTTCAGATGATTTCAATTTCATTGGAAGTGTTTCAAATAGGAAACTTGATGATAAATTTGGTGACCCAAATGAACTGTCTATAAAAGGGGAGACCAATTTCAAGCTTTCAAATTCAAACTCTATGGTTGAATCTAATGGTTGGGATTCTCTTATTGATTTGAAGCTAGGACATTTTGGTGATCAAGGTGAAGATGGTATTAGTATTGGTGCTGCATTTTCCAAAGGAGCAGCTTTTTTGTCTTCTTGTGAATCATCAACACCTCCCAAGAGAGTGAGAGTGCATTCATTGACTTCATACTGTCAAGTTTATGGATGTAATAAGGATCTTAGTTCTTGTAAAGATTACCATAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACAGCTATAGTCATAGTGAATGGAGTTGAGCAGAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGTCTGAATTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGTAGGAAACCACAAGTAGGCGTTCACTCTGCAAATTCCGGGAGATTGTTTCGGCCATGTGGTGATATCATATTTCAAGCAACCACGCCACCACCAGCATCTTTTATCTGTCCAGAGGTGTTGCCAAGTGGTTTCTGGAGACCTATGAAAACAGAACATGAAACCGGCTTTATGCATCTTTCTTCGGTACCTGTTACCAACGAACATCCTCAACAAAGATCTTCATTTGCTTCGTACAACGGAAAACAATTTCCCTTTCGTCATGAAAATGTCGCCACATCCACTACAGGCAGCATGTTTATTGAAAACAATAGCCATTATGCCCATGCTGTTGGAGACACCTATTTTCATACATCATCAACCGTTCGAGGATTATCTGGAACCTCAGACACTTGTGCTCTCTCTCTTCTGTCATCTCAATCCAAGAACACGTCAAGCCAATCATTAGGAATTCCCTTTGATCACCCTTTGGTTATTCCAAGCAGCCACGACAATCTCTATAGCATAAGATCACAGACGATTCCCTCAAGCCGAGTTTCTAGATTTCCATCAGAATTAAATCCTCCAGATGGAAATCATCTCAGTCCTATACTGATATCAGACAATAATGATATTGTGAACTTTGAAATTGCAGATGAAATCTTCCAAGATTCAGATTTTATGAATGCTAAAGACTGTCTTTCATGTGAAGATGATGCAACCATCGACTTACTACAGCTGTCGACACAGCTTCAACGAGTTGAGCATCACAGACAATCTTTTCAGGTGAAGAATGAGAGCGATTCTTGCACTCTCCGAATTACTTAA 1419 0.3953 MESWSYISEEKGYVSNENQGSEEMGFCEILGKQFSDDFNFIGSVSNRKLDDKFGDPNELSIKGETNFKLSNSNSMVESNGWDSLIDLKLGHFGDQGEDGISIGAAFSKGAAFLSSCESSTPPKRVRVHSLTSYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAIVIVNGVEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQVGVHSANSGRLFRPCGDIIFQATTPPPASFICPEVLPSGFWRPMKTEHETGFMHLSSVPVTNEHPQQRSSFASYNGKQFPFRHENVATSTTGSMFIENNSHYAHAVGDTYFHTSSTVRGLSGTSDTCALSLLSSQSKNTSSQSLGIPFDHPLVIPSSHDNLYSIRSQTIPSSRVSRFPSELNPPDGNHLSPILISDNNDIVNFEIADEIFQDSDFMNAKDCLSCEDDATIDLLQLSTQLQRVEHHRQSFQVKNESDSCTLRIT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04118 472 Pfam SBP domain 134 207 IPR004333 GO:0003677
Trre16g04118 472 ProSiteProfiles Zinc finger SBP-type profile. 131 208 IPR004333 GO:0003677
Trre16g04118 472 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 405 IPR044817 GO:0003677
Trre16g04118 472 FunFam Squamosa promoter-binding-like protein 14 125 195 - -
Trre16g04118 472 Gene3D - 130 195 IPR036893 GO:0003677|GO:0005634
Trre16g04118 472 SUPERFAMILY SBT domain 133 212 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04118 Trre-Chr16 46184213 46186749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04118 85 455 SBP-box Gene Family AT1G69170 34.545 5.26e-50 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre16g04118 SBP 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04118 - - gmx:100817547 548.125