Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04117 ATGGAATCTTGGAGTTATATCTCTGAAGAAAAGGGTTATGTCTCTAATGAGAATCAAGGTTCTGAAGAAATGGGTTTTTGTGAAATTTTAGGGAAACAATTTTCAGATGATTTCAATTTCATTGGAAGTGTTTCAAATAGGAAACTTGATGATAAATTTGGTGACCCAAATGAACTGTCTATAAAAGGGGAGACCAATTTCAAGCTTTCAAATTCAAACTCTATGGTTGAATCTAATGGTTGGGATTCTCTTATTGATTTGAAGCTAGGACATTTTGGTGATCAAGGTGAAGATGGTATTAGTATTGGTGCTGCATTTTCCAAAGGAGCAGCTTTTTTGTCTTCTTGTGAATCATCAACACCTCCCAAGAGAGTGAGAGTGCATTCATTGACTTCATACTGTCAAGTTTATGGATGTAATAAGGATCTTAGTTCTTGTAAAGATTACCATAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACAGCTATAGTCATAGTGAATGGAGTTGAGCAGAGGTTTCATTTGCTGTCTGAATTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGTAGGAAACCACAAGTAGGCGTTCACTCTGCAAATTCCGGGAGATTGTTTCGGCCATGTGGTGATATCATATTTCAAGCAACCACGCCACCACCAGCATCTTTTATCTGTCCAGAGGTGTTGCCAAGTGGTTTCTGGAGACCTATGAAAACAGAACATGAAACCGGCTTTATGCATCTTTCTTCGGTACCTGTTACCAACGAACATCCTCAACAAAGATCTTCATTTGCTTCGTACAACGGAAAACAATTTCCCTTTCGTCATGAAAATGTCGCCACATCCACTACAGGCAGCATGTTTATTGAAAACAATAGCCATTATGCCCATGCTGTTGGAGACACCTATTTTCATACATCATCAACCGTTCGAGGATTATCTGGAACCTCAGACACTTGTGCTCTCTCTCTTCTGTCATCTCAATCCAAGAACACGTCAAGCCAATCATTAGGAATTCCCTTTGATCACCCTTTGGTTATTCCAAGCAGCCACGACAATCTCTATAGCATAAGATCACAGACGATTCCCTCAAGCCGAGTTTCTAGATTTCCATCAGAATTAAATCCTCCAGATGGAAATCATCTCAGTCCTATACTGATATCAGACAATAATGATATTGTGAACTTTGAAATTGCAGATGAAATCTTCCAAGATTCAGATTTTATGAATGCTAAAGACTGTCTTTCATGTGAAGATGATGCAACCATCGACTTACTACAGCTGTCGACACAGCTTCAACGAGTTGAGCATCACAGACAATCTTTTCAGGTGAAGAATGAGAGCGATTCTTGCACTCTCCGAATTACTTAA 1398 0.3963 MESWSYISEEKGYVSNENQGSEEMGFCEILGKQFSDDFNFIGSVSNRKLDDKFGDPNELSIKGETNFKLSNSNSMVESNGWDSLIDLKLGHFGDQGEDGISIGAAFSKGAAFLSSCESSTPPKRVRVHSLTSYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAIVIVNGVEQRFHLLSEFDDGKRSCRKRLAGHNERRRKPQVGVHSANSGRLFRPCGDIIFQATTPPPASFICPEVLPSGFWRPMKTEHETGFMHLSSVPVTNEHPQQRSSFASYNGKQFPFRHENVATSTTGSMFIENNSHYAHAVGDTYFHTSSTVRGLSGTSDTCALSLLSSQSKNTSSQSLGIPFDHPLVIPSSHDNLYSIRSQTIPSSRVSRFPSELNPPDGNHLSPILISDNNDIVNFEIADEIFQDSDFMNAKDCLSCEDDATIDLLQLSTQLQRVEHHRQSFQVKNESDSCTLRIT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04117 465 Gene3D - 130 188 IPR036893 GO:0003677|GO:0005634
Trre16g04117 465 ProSiteProfiles Zinc finger SBP-type profile. 131 201 IPR004333 GO:0003677
Trre16g04117 465 Pfam SBP domain 134 200 IPR004333 GO:0003677
Trre16g04117 465 SUPERFAMILY SBT domain 133 205 IPR036893 GO:0003677|GO:0005634
Trre16g04117 465 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 398 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04117 Trre-Chr16 46184213 46186749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04117 85 448 SBP-box Gene Family AT1G69170 32.727 3.86e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre16g04117 SBP 3.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04117 - - gmx:100817547 524.628