Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04116 ATGAACGGATTAAGAGGTGAAAGAGCTCCTCTTTTGGAGGCTGAGCGCGGTTCTGGAAAGGGAAAGAGACAAGATGATTCCACAGCTGATCAAGTCACAGACCTTGAACATGGTGATGCAGTGCCGGCTGCACATGTTGGATTCTTTAGAGTGTTTTCACTTGCAAAGCCTGAGGCTGGAAAATTGGTCATTGCTACAATAGCTCTGTTAATTGCTGCCACATCAAGTACCTTAGTTCAAAAATTTGGTGGGAAGATAATTGATATTGTATCAGGAGATATAAGAACTCCTGAGGACAAAGATGCAGCATTAGATGCTGTCAAGAGCACCATACTAGAAATCCTTATCATCGTTGTCCTCGGTTCAATTTGCTCAGCACTTCGAGCATGGCTTTTTTATTCTGCCAGCGAAAGGGTTGTTGCACGCCTGAGGAAGGATTTGTTCAGTCACCTTGTAAACCAGGAAATAGCTTTCTTCGATGTTACACGAACCGGAGAACTTTTAAGTAGGTTATCTGAAGATACACAGATCATTAAGAATGCTGCAACTACCAACCTCTCAGAGGCCTTGCGAAACTTGTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTACTGGCTTTGGTTGTTGTACCTGTTATTTCGGTTGGTGTTCGTAAATTCGGCCGTTTCTTGCGTGAACTCTCTCATAAAACTCAAGCTGCAGCTGCATTATCTTCTTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACGGTTAGATCTTTTGCTCAGGAAGATTATGAAATAGAACGATACTCCGAGAAAGTTAATGAAACTTTATCGCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGTCTTAATGCAGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACGATCAAGGGTGCCATGACCTCGGGTGATCTTACATCTTTCATTCTGTATAGTCTCTCAGTTGGATCTTCTATATCTGGCTTGTCGGGATTGTATACTACAGTTATGAAAGCCGCCGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTGCCTCATCCATGCCTAAGGCGGGAGATAAATGTCCTTTGGGTGATCATGATGGGGAAGTGGAACTAGACGATGTATGGTTTTCTTATCCATCACGCCCTAATCATATGGTGCTCAAGGGTATTAATATAAAACTGCAACCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGCGGTGGCGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACTAAGGGAAAGATTCTGTTGAATGGTGTTCCTCTGGTAGAAATATCACACAAACATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAATTGACGACGCTGATATTGAAAATGCCGCTAAAATGGCCAACGCGCATGAATTTATATCAAATTTCCCAGAAAAATACAAGACCTTTGTTGGAGAACGAGGCATAAGGCTTTCAGGAGGACAAAAACAGAGAATAGCAATTGCTAGAGCGTTACTTATGGACCCGAAAATTCTCCTACTTGATGAAGCCACTAGTGCTTTAGATGCTGAAAGCGAATACTTAGTGCAGGATGCTATGGATTCTATCATGAAGGGAAGGACAGTTTTAGTCATTGCTCATAGGTTATCAACTGTGAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGTCAAATAGTCGAGAGTGGTACTCATGACGAGCTTCTCGACAAGAATGGTGTTTATACTGCATTAGTCAAGAGACAACTACAAACAACAAAAACTGAAATCTAA 1902 0.4117 MNGLRGERAPLLEAERGSGKGKRQDDSTADQVTDLEHGDAVPAAHVGFFRVFSLAKPEAGKLVIATIALLIAATSSTLVQKFGGKIIDIVSGDIRTPEDKDAALDAVKSTILEILIIVVLGSICSALRAWLFYSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALVVVPVISVGVRKFGRFLRELSHKTQAAAALSSSIAEESFGAIRTVRSFAQEDYEIERYSEKVNETLSLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMTSGDLTSFILYSLSVGSSISGLSGLYTTVMKAAGASRRVFQLLDRASSMPKAGDKCPLGDHDGEVELDDVWFSYPSRPNHMVLKGINIKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKIDDADIENAAKMANAHEFISNFPEKYKTFVGERGIRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLDKNGVYTALVKRQLQTTKTEI 633
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04116 633 Gene3D ABC transporter type 1, transmembrane domain 115 384 IPR036640 GO:0005524|GO:0016020
Trre16g04116 633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 353 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04116 633 Pfam ABC transporter transmembrane region 62 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04116 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 625 IPR027417 -
Trre16g04116 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 387 624 IPR003439 GO:0005524
Trre16g04116 633 PIRSF ABC_prm/ATPase_B 12 633 - -
Trre16g04116 633 MobiDBLite consensus disorder prediction 1 32 - -
Trre16g04116 633 MobiDBLite consensus disorder prediction 9 32 - -
Trre16g04116 633 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524|GO:0016887
Trre16g04116 633 CDD ABC_6TM_AtABCB27_like 65 361 - -
Trre16g04116 633 CDD ABC_MTABC3_MDL1_MDL2 387 625 - -
Trre16g04116 633 Pfam ABC transporter 405 555 IPR003439 GO:0005524
Trre16g04116 633 Gene3D - 385 630 IPR027417 -
Trre16g04116 633 FunFam ABC transporter B family member 25 114 384 - -
Trre16g04116 633 FunFam ABC transporter B family member 25 385 627 - -
Trre16g04116 633 SUPERFAMILY ABC transporter transmembrane region 50 367 IPR036640 GO:0005524|GO:0016020
Trre16g04116 633 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 45 630 IPR039421 -
Trre16g04116 633 SMART AAA_5 414 608 IPR003593 GO:0016887
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre16g04116 Trre-Chr16 46172570 46177206 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04116 137 633 Calmodulin-binding Proteins AT2G36910 36.364 2.39e-93 311
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04116 - - var:108320153 1068.91