Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g04116 | ATGAACGGATTAAGAGGTGAAAGAGCTCCTCTTTTGGAGGCTGAGCGCGGTTCTGGAAAGGGAAAGAGACAAGATGATTCCACAGCTGATCAAGTCACAGACCTTGAACATGGTGATGCAGTGCCGGCTGCACATGTTGGATTCTTTAGAGTGTTTTCACTTGCAAAGCCTGAGGCTGGAAAATTGGTCATTGCTACAATAGCTCTGTTAATTGCTGCCACATCAAGTACCTTAGTTCAAAAATTTGGTGGGAAGATAATTGATATTGTATCAGGAGATATAAGAACTCCTGAGGACAAAGATGCAGCATTAGATGCTGTCAAGAGCACCATACTAGAAATCCTTATCATCGTTGTCCTCGGTTCAATTTGCTCAGCACTTCGAGCATGGCTTTTTTATTCTGCCAGCGAAAGGGTTGTTGCACGCCTGAGGAAGGATTTGTTCAGTCACCTTGTAAACCAGGAAATAGCTTTCTTCGATGTTACACGAACCGGAGAACTTTTAAGTAGGTTATCTGAAGATACACAGATCATTAAGAATGCTGCAACTACCAACCTCTCAGAGGCCTTGCGAAACTTGTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTACTGGCTTTGGTTGTTGTACCTGTTATTTCGGTTGGTGTTCGTAAATTCGGCCGTTTCTTGCGTGAACTCTCTCATAAAACTCAAGCTGCAGCTGCATTATCTTCTTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACGGTTAGATCTTTTGCTCAGGAAGATTATGAAATAGAACGATACTCCGAGAAAGTTAATGAAACTTTATCGCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGTCTTAATGCAGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACGATCAAGGGTGCCATGACCTCGGGTGATCTTACATCTTTCATTCTGTATAGTCTCTCAGTTGGATCTTCTATATCTGGCTTGTCGGGATTGTATACTACAGTTATGAAAGCCGCCGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTGCCTCATCCATGCCTAAGGCGGGAGATAAATGTCCTTTGGGTGATCATGATGGGGAAGTGGAACTAGACGATGTATGGTTTTCTTATCCATCACGCCCTAATCATATGGTGCTCAAGGGTATTAATATAAAACTGCAACCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGCGGTGGCGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACTAAGGGAAAGATTCTGTTGAATGGTGTTCCTCTGGTAGAAATATCACACAAACATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAATTGACGACGCTGATATTGAAAATGCCGCTAAAATGGCCAACGCGCATGAATTTATATCAAATTTCCCAGAAAAATACAAGACCTTTGTTGGAGAACGAGGCATAAGGCTTTCAGGAGGACAAAAACAGAGAATAGCAATTGCTAGAGCGTTACTTATGGACCCGAAAATTCTCCTACTTGATGAAGCCACTAGTGCTTTAGATGCTGAAAGCGAATACTTAGTGCAGGATGCTATGGATTCTATCATGAAGGGAAGGACAGTTTTAGTCATTGCTCATAGGTTATCAACTGTGAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGTCAAATAGTCGAGAGTGGTACTCATGACGAGCTTCTCGACAAGAATGGTGTTTATACTGCATTAGTCAAGAGACAACTACAAACAACAAAAACTGAAATCTAA | 1902 | 0.4117 | MNGLRGERAPLLEAERGSGKGKRQDDSTADQVTDLEHGDAVPAAHVGFFRVFSLAKPEAGKLVIATIALLIAATSSTLVQKFGGKIIDIVSGDIRTPEDKDAALDAVKSTILEILIIVVLGSICSALRAWLFYSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALVVVPVISVGVRKFGRFLRELSHKTQAAAALSSSIAEESFGAIRTVRSFAQEDYEIERYSEKVNETLSLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMTSGDLTSFILYSLSVGSSISGLSGLYTTVMKAAGASRRVFQLLDRASSMPKAGDKCPLGDHDGEVELDDVWFSYPSRPNHMVLKGINIKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKIDDADIENAAKMANAHEFISNFPEKYKTFVGERGIRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLDKNGVYTALVKRQLQTTKTEI | 633 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g04116 | 633 | Gene3D | ABC transporter type 1, transmembrane domain | 115 | 384 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g04116 | 633 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 63 | 353 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g04116 | 633 | Pfam | ABC transporter transmembrane region | 62 | 335 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g04116 | 633 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 378 | 625 | IPR027417 | - | |
Trre16g04116 | 633 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 387 | 624 | IPR003439 | GO:0005524 | |
Trre16g04116 | 633 | PIRSF | ABC_prm/ATPase_B | 12 | 633 | - | - | |
Trre16g04116 | 633 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Trre16g04116 | 633 | MobiDBLite | consensus disorder prediction | 9 | 32 | - | - | |
Trre16g04116 | 633 | ProSitePatterns | ABC transporters family signature. | 527 | 541 | IPR017871 | GO:0005524|GO:0016887 | |
Trre16g04116 | 633 | CDD | ABC_6TM_AtABCB27_like | 65 | 361 | - | - | |
Trre16g04116 | 633 | CDD | ABC_MTABC3_MDL1_MDL2 | 387 | 625 | - | - | |
Trre16g04116 | 633 | Pfam | ABC transporter | 405 | 555 | IPR003439 | GO:0005524 | |
Trre16g04116 | 633 | Gene3D | - | 385 | 630 | IPR027417 | - | |
Trre16g04116 | 633 | FunFam | ABC transporter B family member 25 | 114 | 384 | - | - | |
Trre16g04116 | 633 | FunFam | ABC transporter B family member 25 | 385 | 627 | - | - | |
Trre16g04116 | 633 | SUPERFAMILY | ABC transporter transmembrane region | 50 | 367 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g04116 | 633 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 45 | 630 | IPR039421 | - | |
Trre16g04116 | 633 | SMART | AAA_5 | 414 | 608 | IPR003593 | GO:0016887 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g04116 | Trre-Chr16 | 46172570 | 46177206 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g04116 | 137 | 633 | Calmodulin-binding Proteins | AT2G36910 | 36.364 | 2.39e-93 | 311 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g04116 | - | - | var:108320153 | 1068.91 |