Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04113 ATGATGATAGAAAATTCTTCTTCAAATCAACAAGAAGATGAAAATGGAAGAATGAAATTGTCAAACAAAGCAATAGCAACATCAAGACAATGGACATCATTAAGAAATCCAAGAATTGTTCGAGTGTCACGTTCTTTAGGAGGAAAAGATAGACATAGCAAAGTATGTACAATTAGAGGATTAAGAGACCGTCGTATTAGGTTATCTGTACCAACAGCAATTCAGTTATATGATCTTCAAGATAGACTTGGTTTAAGTCAACCTAGTAAAGTTGTTGATTGGTTAATTGAAGCAACACAATCTGATATTGATAAATTACCACCACTTCAAAATATTCCTCAATGTTTTACTACTCAACAACAAACCCTATTGCATCATCATCAACAAACTGGTTTTTATGATCATCTTCAAATCAAAGGTAAAGAAGCTGAAATTACTTCAGAAAAAAGTAATTATTTTTATAATAATAATTACCCTTCAAGTGGTTTTCCATATAACTTGGATTATCCTTCAAGTACTCTAACTTTATCTCAATTTGGAAGCAATAATAATCATGGTAATTCATCACAATTACTTTTTTGTCCATCTTCTAATTCTACTATGCCAACATCAATTTTTAGTAGTAGTAGTAGTAATTTGCAGCAACATGCTCCATCAATGGAAATTAGTAGTGATGTTCAAAGACAATTCACAAATGTTCAGATCTTGAATTCATCATCAACAAGTTCTTTCATTCCATCTCTTCAACTTCCAATCAATTCGCCTTTTAGACGTCTTCCAATGCCGTTTATAAATTCCAAGGTTCTTGATTCAGATCACAATAACACCAGAAATTAA 837 0.3142 MMIENSSSNQQEDENGRMKLSNKAIATSRQWTSLRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEATQSDIDKLPPLQNIPQCFTTQQQTLLHHHQQTGFYDHLQIKGKEAEITSEKSNYFYNNNYPSSGFPYNLDYPSSTLTLSQFGSNNNHGNSSQLLFCPSSNSTMPTSIFSSSSSNLQQHAPSMEISSDVQRQFTNVQILNSSSTSSFIPSLQLPINSPFRRLPMPFINSKVLDSDHNNTRN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04113 278 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 238 IPR005333 GO:0003700
Trre16g04113 278 Pfam TCP family transcription factor 48 148 IPR017887 -
Trre16g04113 278 ProSiteProfiles TCP domain profile. 48 106 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04113 Trre-Chr16 46148324 46149160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04113 31 116 TCP Transcription Factor Family AT5G60970 82.759 2.39e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre16g04113 TCP 5.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04113 - - psat:127073713 320.087