Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04107 ATGGCAAAATCCATCTCCCCAAACGCCATCTCCACCTTACTTTCAAATCCATCTCCTGATTCTTCATCAGATCTTCCTGAAATCATTGTTCAAATTCTCGATCTCAAACAAAATGGCAACAGATACATGTGTTTTGTGAGTGATGGAAAAATGAAATTAAGAGCAATACTACCTTCAAATCAGTTTTCAGATGTACTTTCTGGAAAGATTCAGAACCTTGGTCTCATTCGCATAGTTGATTATACTCTCAATGATATTCCAAACAAGCCTGATAAGTATCTTATTGTTACAAAGTGTGAAGCGGTTTCTCCTGCGCTTGAAATGGAGATAAAGAGTGAACCAACTGGTATCACTTTGAAGCCGAAGGAAGATGTTGTAGTCAAGACTGAAGGTGCTGCTGGTATTGTTCTAAAGCCGAAGCAGGATGTTGTTTCAAAATCTGCTGCTCAGATTGTGCGTGAGCAACATGCAAATTCTGCTCCTGCGAGATTGGGTATGACGCGCAGGGTGCGTCCTCTTGTTTCTTTGAATCCTTATATGGGTGGTTGGACCATCAAGGTCAGTGTTACCAGCAAAGGAACCATGCGTACCTATAAGAATGCTAGAGGAGAAGGTTGTGTATTCAATGTTGAATTGACTGATGAAGATGGTACTCAGATTCAAGCAACTATGTTTAATGATGCTGCAAGGAAGTTTTTTGACAAATTTGTTATGGGAAAGGTTTATTATATTTCAAAGGGTACTTTGAAAGTTGCTAACAAACAGTTTAAAACTGTGGCAAATGATTATGAGATGACATTGAATGAGAATTCTGAGGTGGAAGAGGTTCCTGAAGAAGCTGGGTTTGTTCCAGAGACAAAATTCAATTTTGTCCCAATTGATCAATTGGGTCCTCATGTAAATAAGCCTGATCTTGTTGATGTTGTTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGTATTCGAAGGAAGAGCAACAACGAGAGTGTTGCAAAGCGTGACATTACTATTGCTGATGAATCCAAGAAGACAGTTGTTGTGTCTTTGTGGGGTGACCTTGCAACTAACATTGGACAAGAGTTACTGGATATTGCTGATAAATCCCCAGTAGTTGCAATCAAATCTCTCAAGGTTGGGGACTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTTTAGTTCTGATTGATCCAGAAGTACCTGAAGCTCAGAAGCTCAGAACCTGGTATGATTCTGAAGGCAAGGATACTGCTATGGCTGCTTTAAGCTCTGGTTCAATTCCATCCAACAGTGCAAGCAGATCAGTGTACTCTGATCGTGTTACACTTTCTTATATAACCTCTAACCCCTCCTTGGGAGCTGAGAAGCCTGCATTTTTTAGCATCAGAGGATACATAAGTTTCATAAAGGCAGATCAGGCAATGTGGTATCGTGCCTGTAAGACTTGCAATAAGAAAGTTACTGAAAGCACTGGTGCTGGGTACTGGTGTGAAAGTTGCCAGAAAAACGATGAAGAATGTAACTTAAGATATATTATGGTTGTAAAAGTTACTGATGCAAGTGGTGAGGCTTTTATATCAACCTTTAATGAAGAAGCTGAGAAAATCATTGGTTGCTCTGCTGATGAGCTAGATAGCCTCAGATCACAGGAGGGAGAAGATAGTCCTTATCAACTGAAATTGAAGCAAGCTACCTGGACTCCACACCTCTTGCGGGTTAGTGTTTCTCAGAATGAGTATAATAATGAAAAGCGGCAAAGGATAACTGCCCGGGCTGTTGTTCCTGTTGACTATGCCGTGGAGTCCAGAAATCTCCTTGAAAACATATCAAAGATGGGAGTCTCTCAATAA 1851 0.403 MAKSISPNAISTLLSNPSPDSSSDLPEIIVQILDLKQNGNRYMCFVSDGKMKLRAILPSNQFSDVLSGKIQNLGLIRIVDYTLNDIPNKPDKYLIVTKCEAVSPALEMEIKSEPTGITLKPKEDVVVKTEGAAGIVLKPKQDVVSKSAAQIVREQHANSAPARLGMTRRVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVMGKVYYISKGTLKVANKQFKTVANDYEMTLNENSEVEEVPEEAGFVPETKFNFVPIDQLGPHVNKPDLVDVVGVVKNVSSTMSIRRKSNNESVAKRDITIADESKKTVVVSLWGDLATNIGQELLDIADKSPVVAIKSLKVGDFQGVSLSAISKSLVLIDPEVPEAQKLRTWYDSEGKDTAMAALSSGSIPSNSASRSVYSDRVTLSYITSNPSLGAEKPAFFSIRGYISFIKADQAMWYRACKTCNKKVTESTGAGYWCESCQKNDEECNLRYIMVVKVTDASGEAFISTFNEEAEKIIGCSADELDSLRSQEGEDSPYQLKLKQATWTPHLLRVSVSQNEYNNEKRQRITARAVVPVDYAVESRNLLENISKMGVSQ 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04107 616 CDD RPA1_DBD_A 172 275 - -
Trre16g04107 616 PANTHER REPLICATION FACTOR A 1, RFA1 183 575 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre16g04107 616 FunFam Replication protein A subunit 169 278 - -
Trre16g04107 616 FunFam Replication protein A subunit 282 421 - -
Trre16g04107 616 Gene3D - 424 612 IPR012340 -
Trre16g04107 616 SUPERFAMILY Nucleic acid-binding proteins 438 612 IPR012340 -
Trre16g04107 616 Gene3D - 283 423 IPR012340 -
Trre16g04107 616 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Trre16g04107 616 Pfam OB-fold nucleic acid binding domain 184 264 IPR004365 GO:0003676
Trre16g04107 616 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Trre16g04107 616 SUPERFAMILY Nucleic acid-binding proteins 288 415 IPR012340 -
Trre16g04107 616 NCBIfam replication factor-a protein 1 (rpa1) 4 611 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre16g04107 616 CDD RPA1_DBD_B 312 411 - -
Trre16g04107 616 Gene3D - 169 278 IPR012340 -
Trre16g04107 616 SUPERFAMILY Nucleic acid-binding proteins 171 280 IPR012340 -
Trre16g04107 616 CDD RPA1_DBD_C 446 611 IPR047192 -
Trre16g04107 616 FunFam Replication protein A subunit 426 612 - -
Trre16g04107 616 Pfam Replication protein A OB domain 299 396 IPR031657 -
Trre16g04107 616 FunFam Replication protein A subunit 4 114 - -
Trre16g04107 616 Pfam Replication factor-A C terminal domain 459 605 IPR013955 -
Trre16g04107 616 Gene3D - 4 117 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04107 Trre-Chr16 46091712 46094731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04107 1 616 Core DNA Replication Machinery Family AT5G08020 66.721 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04107 K07466 - qsu:112017680 919.457