Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04104 ATGGCTTTCTTTGGTAAACTTGGGAATATTCTAAGTAGGGCTGGAAATGAGACTATTGTTTCTGAATTGCGTTCGTCCCCATCTGCTTTTCAGGCTATAAGATGCATGTGTTCTGCTCCAAGCACAAAGCTGTTTGTAGGGGGCATTTCATTTTCAACCGATGAACAAGGTTTGAGGGAAGCTTTTTCAAGATATGGTGAAGTTCTTGATGCAAGGATAATCGTGGATCGTGAAACCGGTAGATCCAGAGGATTTGGCTTTATCACATTCAATTCAGTTGAGGAGGCATCTAGTGCCATTCAGGCCTTGGATAGTCAGGAACTTCATGGTCGTCGGGTCAGAGTAAATTATGCTAATGAAAGGCCCCGTGGATATGGCGGTGGTGGCGGTTCTTATGGCAATGCATCATATGGTGGTGGAGGTGGGTATGCAGGCTCTCAATATGGTGGTGGAGGTGGGTATGCAGGCTCTCAATATGGTGGTGCTTCAAGTGGCGGTGGCTATGGTGGAAATGTAGATGGAGGTTATGGGGGTGGTGGATATGGTGGAGGCAGCTATGGGCCAGGTGGTAATTATGGAGGTAGTGGTGCTGCCAATAATTATTCTGCTCCTAACAGTTTTGAAACTAACAATACTGGTGGGGGGTTGGAATATGGCAGCAGTGGCCAAGATATCACAGATGTTGGGGACCCGATCAGCAATGTAAACGAGGATATCACAGATGTTGGGGACCCGATCGAAGGAAATTATAGGGATGACGGCGATGATACTGATAATTTTGCCAAAAGGGCCTGA 795 0.4667 MAFFGKLGNILSRAGNETIVSELRSSPSAFQAIRCMCSAPSTKLFVGGISFSTDEQGLREAFSRYGEVLDARIIVDRETGRSRGFGFITFNSVEEASSAIQALDSQELHGRRVRVNYANERPRGYGGGGGSYGNASYGGGGGYAGSQYGGGGGYAGSQYGGASSGGGYGGNVDGGYGGGGYGGGSYGPGGNYGGSGAANNYSAPNSFETNNTGGGLEYGSSGQDITDVGDPISNVNEDITDVGDPIEGNYRDDGDDTDNFAKRA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04104 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Trre16g04104 264 SUPERFAMILY RNA-binding domain, RBD 39 152 IPR035979 GO:0003676
Trre16g04104 264 Gene3D - 34 155 IPR012677 -
Trre16g04104 264 PRINTS Eggshell protein signature 164 174 - -
Trre16g04104 264 PRINTS Eggshell protein signature 138 153 - -
Trre16g04104 264 PRINTS Eggshell protein signature 38 54 - -
Trre16g04104 264 PRINTS Eggshell protein signature 189 207 - -
Trre16g04104 264 SMART rrm1_1 43 116 IPR000504 GO:0003723
Trre16g04104 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Trre16g04104 264 MobiDBLite consensus disorder prediction 244 264 - -
Trre16g04104 264 MobiDBLite consensus disorder prediction 211 264 - -
Trre16g04104 264 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 24 201 - -
Trre16g04104 264 CDD RRM2_NsCP33_like 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04104 Trre-Chr16 46078203 46080714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04104 41 167 Eukaryotic Initiation Factors Gene Family AT4G34110 27.451 6.68e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04104 K12741 - gmx:100799124 196.438