Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04100 ATGGCATCGGCGAAGCGATGCCATTACGAAGTTCTCGGCCTCTCTCGTGACTGCTCACCGGACGAAATCCGATCATGTTACCGGAAACTCGCCCTCCAACGTCACCCAGACAAGCTCGTCAAATCAGGCCTCTCTCAATCCGAAGCCACCGCTCAATTTCAGGAGCTACAACACGCTTACGAGGTCCTCTCCGATCCAAAAGAACGCGCTTGGTACGATTCTCACCGTTCTCAAATCCTCTTCTCCGATCCAAATTCCCACTCCAATTCCGTTGTCCCTGACCTCTTCTCATTTTTCTCAAATACCGTCTTTTCCGGTTATTCTGATTCCGGTAAGGGTTTTTATAAGGTTTATTCTGATGTATTCGATAAAATTCAGGCGAATGAGATTAATTTCGCTAAGAAATTAGGTATAGGAATTGATTCTGTTAAACAAGCTCCTCTTATGGGGAATTTGGATAGTCCTTATGCTCAGGTTACGGCTTTTTATAGTTATTGGTTAGGATTTTCGACGGTTATGGATTTTTGTTGGGCGGATGAGTATGATGCGATGGCTGGTCCGAATAGGAAATCGCGGAGGTTGATGGAGGAAGAGAATAATAAGGTGAGGAGGAAGGCTAAGAGGGAGTATAATGATACTGTGAGGAGGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGAGTGATTGATATGAAGGTGAAGAAGAATTTGGATATGGAGAAGAAGAAAGAGGAGGAGAAAGAGAGGAAGAGGAAGTTGGAGATGGAGAAGAAGGAGAGGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGATGAGGAAGAGGTTGAGGATTTGTTTGAGGATGATGAGTTTGAGGAGAAGAAAGATGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAATCATGAGCAGTCGAAGAAACATAAGGAGAAAGTTGCTGAGTTTAAGGATTCGCTTGACGATGAAGAGGAGTTAGAAGCTGAGGTGGATGAGGAAAGAGAAGGAGATGGAGAGGAGAGATTAGCAAGTGAGGAAGATGGAATTGGGGTTGATGATTTGGAGGAGAGGATTCGAGATGGTCTTAATGTAGCAGAAGAGGATGCAAATGGGGTTGAACTGAATGATGATGGTGACGATGATGAATTTTTTGATGCGGCACAGACAAAAGAGGGAGAGGAGGCAGGTGTATCAGTTGATTTTGATGTTAATGACGACAAGGATGGTGATGAAGACAGTGAAAATGATGTTCTTGAAACAACGGTGTTTGGGCACAAGGGTAGAGTTTATTTTGATGAGAATGATGATGAAGGTGATGAAACCAATATTCTTGAAGCAATGTTGGCTGGGCGCAAGAGCAGAAAACATGGTGCTTCAATACACAAGCCCACGGCTTCTGTAACTCCAACTCAAATTGATAGTGAGAATGAGAATGATGGGATTGGTGCTATGGAATATAACAACCGAAAGACCGCAAAAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTGGCAAAAATGGGGATGGATCTTATGTGCCTGACAATGGCAAACATGAGAATATGAACAGTAATGGAAATGATTATTTTTATGCACAAAAGTCTAGTTCTCAAAATTTCGAGGAAAATGGTGGTAAAGAAAATGAGCAGGTGGGTAGAGATAAGAAGATTTCAAATCAACCTGTTGATAAAAAAGGAACTTCAAAGGATACAAAGACCAAGGCAATAATTTCATCCAAAGGAAAAAAAGCAAAGAATAATTCGAAGAATCTTGGCAATTTTTGTGAGACATGTGAAATGGAGTTTGAATCAAGGAATAAATTACATAAGCATCTGGGTGTGTCTGGGCATGCAGCAATTAAAGGTCGATAA 1899 0.4202 MASAKRCHYEVLGLSRDCSPDEIRSCYRKLALQRHPDKLVKSGLSQSEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSHSNSVVPDLFSFFSNTVFSGYSDSGKGFYKVYSDVFDKIQANEINFAKKLGIGIDSVKQAPLMGNLDSPYAQVTAFYSYWLGFSTVMDFCWADEYDAMAGPNRKSRRLMEEENNKVRRKAKREYNDTVRRLADFVKKRDKRVIDMKVKKNLDMEKKKEEEKERKRKLEMEKKERAMAYEEPDWAKVDEEEVEDLFEDDEFEEKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKDSLDDEEELEAEVDEEREGDGEERLASEEDGIGVDDLEERIRDGLNVAEEDANGVELNDDGDDDEFFDAAQTKEGEEAGVSVDFDVNDDKDGDEDSENDVLETTVFGHKGRVYFDENDDEGDETNILEAMLAGRKSRKHGASIHKPTASVTPTQIDSENENDGIGAMEYNNRKTAKKKRRAKKEKGGKNGDGSYVPDNGKHENMNSNGNDYFYAQKSSSQNFEENGGKENEQVGRDKKISNQPVDKKGTSKDTKTKAIISSKGKKAKNNSKNLGNFCETCEMEFESRNKLHKHLGVSGHAAIKGR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04100 632 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 324 IPR013087 -
Trre16g04100 632 MobiDBLite consensus disorder prediction 380 397 - -
Trre16g04100 632 SUPERFAMILY beta-beta-alpha zinc fingers 287 338 IPR036236 -
Trre16g04100 632 ProSitePatterns Zinc finger C2H2 type domain signature. 604 626 IPR013087 -
Trre16g04100 632 MobiDBLite consensus disorder prediction 526 554 - -
Trre16g04100 632 MobiDBLite consensus disorder prediction 330 350 - -
Trre16g04100 632 SUPERFAMILY Chaperone J-domain 4 105 IPR036869 -
Trre16g04100 632 SMART dnaj_3 6 68 IPR001623 -
Trre16g04100 632 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Trre16g04100 632 MobiDBLite consensus disorder prediction 473 487 - -
Trre16g04100 632 MobiDBLite consensus disorder prediction 307 425 - -
Trre16g04100 632 Coils Coil 316 343 - -
Trre16g04100 632 Gene3D Classic Zinc Finger 284 346 - -
Trre16g04100 632 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Trre16g04100 632 MobiDBLite consensus disorder prediction 464 599 - -
Trre16g04100 632 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Trre16g04100 632 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Trre16g04100 632 Coils Coil 236 259 - -
Trre16g04100 632 MobiDBLite consensus disorder prediction 555 586 - -
Trre16g04100 632 MobiDBLite consensus disorder prediction 351 376 - -
Trre16g04100 632 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 632 IPR044648 -
Trre16g04100 632 Pfam DnaJ domain 8 73 IPR001623 -
Trre16g04100 632 SMART c2h2final6 602 626 IPR013087 -
Trre16g04100 632 SMART c2h2final6 295 319 IPR013087 -
Trre16g04100 632 CDD DnaJ 7 65 IPR001623 -
Trre16g04100 632 MobiDBLite consensus disorder prediction 307 329 - -
Trre16g04100 632 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Trre16g04100 632 PRINTS DnaJ domain signature 9 27 IPR001623 -
Trre16g04100 632 PRINTS DnaJ domain signature 27 42 IPR001623 -
Trre16g04100 632 PRINTS DnaJ domain signature 48 68 IPR001623 -
Trre16g04100 632 Gene3D DnaJ domain 1 91 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04100 Trre-Chr16 46062121 46064543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04100 3 632 C2H2 Transcription Factor Family AT1G74250 47.189 3.17e-173 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre16g04100 DnaJ 9.3e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04100 K09506 - gmx:100788305 756.133