Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04085 ATGGAAGAAAAATATCAAATTCAAGAATTCAAACATGCTTGCAAATTCTGTAACAAAAGCTTCCCTTGTGGTAGATCCTTAGGTGGTCACATGAGGTCTCATATCAACAACTTATCATCTGAAAAAACAGAAAAGAAACAAAAAGTTTCAATCAAAATCAACAATGGAAGTTGCATTGATCATTCTGAAGCTACTGCTTATGGTTTAAGAGAGAATCCAAAGAAGACATGGAGAAAAAGAGTTGCTGAGTCAAGTGAAGAAGATAGTTATGTGTATGATAAATTCTGCAAAGAGTGTGGAAAATGTTTTCAGTCATGGAAAGCTTTGTTTGGTCACATGAAGTGTCATTCTGATCATCAGAAAGAAAGAGTTTCTGATAGTTTGGAAGATCATGATTCATGGACTAATAATGCTAAAGATGTTCAATCTGATAATGAAATCACTGCTCCAAGAAGAAAAAGAAGATCAAAGAGAACAAGAACAAGGTATAATAATAAGGTAGGTTCTTCTACTGCTGCAACTGCAACAACTTCTTCTTCTGTTTCTGAAGTTGAACATGAACAAGAAGAAGTTGCTATAAGCTTGATTATGCTTAGTAGAGATGTTAGTCCTTGGAGTGGTCTTGCTGAATCATCTGATAATAATTCTGTTTACTTCGAAGCTCGATCTTCTGTTCGAACTAATCTTGTTACTAAATTCGATGCGAAAAACAAGAATTCTACTACTACTGCTGCTGCTGCTGCGGCGGCTGCTACTATCAATATTGCAAAGTTGGGAAAATCTGTTTCCAAAAAATTGAACTTCAAGGGAAAAAATATGGAGATTTTGGATACTGAAAAAGGATTTAAGATGAACAAAACTGGAGTTTCCATTAAAGGGTTTCTGAAATCAACAAAATCTGAGGTTGATTATGTGTCTACATTGGAAGAATCAGAAGTTGAAAATGGGAAAAGCAGAGTCAATGGAACAGAATCAGTTATATCAAAGTCAGCTATGAACATGTCTCATGATGAAGAAGATGAATTCATCAAGAATTTTCATAAGAGAGGGAAATTTGAGTGTACTACTTGTAACAAAATTTTCCATTCATATCAAGCTCTTGGAGGACATAGAGCTAGTCATAAAAAGAGTAAAGGGTGTTTTGCTTCAAAGATTGAGAGTAGTGAAAACAGCATTGAATTTGTTGAAACTGATCTATCTCATGAACAAACAATAACTGAAAGCAGCAAGGTCATGAAGATTAGTGATAACAACATTGAATATGTTCAAAATATGAAGATCAAAGGTCATCATGAATGTCCAATTTGCTTTAAGGTTTTTCAATCTGGTCAAGCTTTAGGTGGACATAAAAGATCTCATATGGTTGCTGCTACTGGTTCTGAGAGTAGAGTTATAGTTCAAGTTCAAGAACAAGTTCCACAGATTAGGGACTTTCTTGATCTTAATCTACCTGCTTCTACTGAGGAAGAAAGTAATAGTCATGCTGATTCTAATAGACCTTGGTGGATTGTTGAAGGAAATCAACAAGAGGCACTTGTAGGGTAG 1545 0.3495 MEEKYQIQEFKHACKFCNKSFPCGRSLGGHMRSHINNLSSEKTEKKQKVSIKINNGSCIDHSEATAYGLRENPKKTWRKRVAESSEEDSYVYDKFCKECGKCFQSWKALFGHMKCHSDHQKERVSDSLEDHDSWTNNAKDVQSDNEITAPRRKRRSKRTRTRYNNKVGSSTAATATTSSSVSEVEHEQEEVAISLIMLSRDVSPWSGLAESSDNNSVYFEARSSVRTNLVTKFDAKNKNSTTTAAAAAAAATINIAKLGKSVSKKLNFKGKNMEILDTEKGFKMNKTGVSIKGFLKSTKSEVDYVSTLEESEVENGKSRVNGTESVISKSAMNMSHDEEDEFIKNFHKRGKFECTTCNKIFHSYQALGGHRASHKKSKGCFASKIESSENSIEFVETDLSHEQTITESSKVMKISDNNIEYVQNMKIKGHHECPICFKVFQSGQALGGHKRSHMVAATGSESRVIVQVQEQVPQIRDFLDLNLPASTEEESNSHADSNRPWWIVEGNQQEALVG 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04085 514 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Trre16g04085 514 Gene3D Classic Zinc Finger 349 453 - -
Trre16g04085 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Trre16g04085 514 ProSitePatterns Zinc finger C2H2 type domain signature. 354 374 IPR013087 -
Trre16g04085 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 431 453 IPR013087 -
Trre16g04085 514 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Trre16g04085 514 MobiDBLite consensus disorder prediction 127 184 - -
Trre16g04085 514 SUPERFAMILY beta-beta-alpha zinc fingers 95 374 IPR036236 -
Trre16g04085 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 352 379 IPR013087 -
Trre16g04085 514 Gene3D Classic Zinc Finger 9 116 - -
Trre16g04085 514 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 502 - -
Trre16g04085 514 SMART c2h2final6 352 374 IPR013087 -
Trre16g04085 514 SMART c2h2final6 94 116 IPR013087 -
Trre16g04085 514 SMART c2h2final6 431 453 IPR013087 -
Trre16g04085 514 SMART c2h2final6 12 34 IPR013087 -
Trre16g04085 514 ProSitePatterns Zinc finger C2H2 type domain signature. 433 453 IPR013087 -
Trre16g04085 514 Pfam C2H2-type zinc finger 12 34 - -
Trre16g04085 514 Pfam C2H2-type zinc finger 352 376 - -
Trre16g04085 514 Pfam C2H2-type zinc finger 96 117 - -
Trre16g04085 514 Pfam C2H2-type zinc finger 430 454 - -
Trre16g04085 514 MobiDBLite consensus disorder prediction 163 182 - -
Trre16g04085 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Trre16g04085 514 SUPERFAMILY beta-beta-alpha zinc fingers 9 37 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04085 Trre-Chr16 45933319 45934863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04085 6 237 C2H2 Transcription Factor Family AT1G26610 39.759 1.89e-37 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre16g04085 zf-C2H2_6 5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04085 - - tpra:123887209 852.047