Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04063 ATGGCGCTGTTCAGAAGATTCTTCTACCGGAAACCACCGGATCGCCTTTTGGAGATCTCTGAGAGAGTTTATGTTTTTGATTGTTGCTTCTCCACGGACGTCTTGGAAGAAGATGAATACAGAGTTTATATGGGGGGAGTTGTGGCTCAGCTACAGGATCACTTTCCGGAAGCTTCTTTCATGGTGTTCAACTTCAGAGAAGGGGAGAGACGCACCCAAGTCTCGGACATACTTTCTCAGTATGACATGACAGTTATGGAGTATCCTCGGCAATATGAAGGTTGTCCCCTTCTACCTCTAGAGATGATCCATCACTTTCTTCGATCAAGTGAAAGCTGGCTGTCTTTGGAGGGGCAGCAGAATGTGCTTTTGATGCACTGCGAAAGAGGAGGTTGGCCTGTGCTGGCATTCATGCTAGCCGGTCTTTTGTTATACCGGAAACAGTACACTGGAGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCCAGAGAACTACTCCACCTTTTAACTCCTTTGAACCCACAGCCTTCTCAGTTCAGATATCTTCAGTACATTTCAAGGAGACATCTGGGTTCTGAGTGGCCACCATCAGAAACACCCTTGTATCTGGATTGTCTGATTCTTAGAGACCTTACAGTATTTGATGATGGAAAAGGTTTCAGGCCTGTTGTGCGTGTTTATGGCCCAGACCCTTCAAAACCTGCCAATAGAAGTTCAAAGCTTCTTTTTTCAACCTCAAACTCCAAAAAGCATGCTCGACACTATCAACAGGCAGAGTGTATGCTTGTGAAGATTGATATACATTATCGTGTTCAAGGAGATGTAGTTCTCGAGTGCATAAATTTAAATGAAGATTTTACTGGTGAGGAGACGATGTTTAGAATTATGTTCCATACTGCATTTGTGCGGTCAAATATATTGATGTTGAACCGTGATGAAATTGATATTATGTGGGATGCAAAGGATCAATATCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCCGATGCTGTTATACATGATGTGAACACAGTCTTGGTGTGTGAAGATGCAAATGAGACAGAAAGTGCTGATATAGAAAATGCTTCACCTGAGGAATTCTATGAAGTGGAAGAGATTTTCAGCAATGCAATTGATGCACAGGAAAGTAAGGCAGATGATGATTCTCATACCTTACATGACAATGCAGTGGGTGGTGAAAATCATAAAGGGATCTTGAGGGAGGATTCGGATCCTCATGCTTTTCAGGATTGCACGCCAGATTATGGGATTCTCAAACAGGTTGGAAAGATGGATTCCGGTATTAATGCTGTGAAAGATATATCTGTTGACGATGTTAACTACAAGTTCAATGAGAGCATGGATTCAGATCCTCAAGCAGTGAAGGACATTGCCATGGATGATGGAGAAATTAAGTCAACTTCCACTGCCATCACTTATGATATGACGATACCTCTGGAAATAAAGGAAATCCCTGAGGACGCTGATCGGGGATCAGACATTACGCCGAACAAATTTGATGAAGATAACGAAGCAACAGAAAAGGAATTAGATTACAAGGAGGGGCAGCCTATGCCTGATAGCTCCAAACAAAAATCTGGTAAACTACTTCCATCTACTGCTAAGAAACAATTTCCATCAAACTCAAAGCCAGGAGATACTGTTGGAAAACAAAAGATTAAAGAAACCGCTGCTTTTCAGGCAAAACAAGCTAAACCAACTGCAGTGACGAGGTGGATTCCTTCTAACAAGGGTTCTTACACAAATTCGATGCATGTATATTATCCACCATCAAGGATTAATAGTGCACCACCTGGACTGTCAAATTTAACCACTTCAAAGGAGAAAATGGAAGATAACAAAGCAAGACCTTCATCTGCTCCTTTTGGTTCCGCGGCAGGTGTTTCTGCTGACATGAAAAATGACCCGAAAAGTCGGAAGGTGGCCACTTCGAAATCGTTTGGCCACACAGTATCAGAAATTGATGCAAAATGTCCACCATCGCCACCATCAAAAGAGACATCTCTTAAGTCAGCTACTCAGGCAGAAGAACAGAGCTCAGAGCAATTGCAACAGCCTCCCCCACGGCCTTCTCCCCCTCCCCCACCACCACCTCCGCCACCACCCTTAACATCATTTAGTAGACAAGACATTTGGGTGAATTTACAGCCTGCAACTTCTCCGTCACTTCCACCTCCGCCACCACCTCCACCCTCCTGGAAGTTTGTGGCTTCATCAATAGTTGGAGAGACTTATGGTTCTTTACCACTCTCGCCACCTACTCTTCCCTTTGCAAGCAGTGAAATTACATATAAATTTTCTGAAGTATCAACTGCAGTGACCCAGTCAAGGCCTCCCCCTCCTCCACCACCACCGCCCCCAATCCCCCCTCCAAGGTACGAAGTATCAACCATTCCTCCTCCTCCACCACCACCACCACCACCACCAACAGTACCTCCTACAAAGCATGGAATTTCATCAATACCTCCTCCTCCCCCCTCGTTTCCTATGTCTTCATCAAACATGTCCCCATTCTTGCCACCTCCAATTGCATCTCATAAAGCTCCACCCCCACCGCCACCCCCACCTCCGCCACCTTTTGCTAATTCATATATAGGTTCACCTACACCACCTCCACCTCCTTTTACTAATGCTTCACAAGCTCCACCCCCACCTACACCACCTCCACCGCCCTTTACTAATGCTCCCCCAACAATGCCTCCACCTCCTCCTCCACCACCACCACCACCACCTCCTTTTACTAGTGCCCCACCAGTACCGCCCCCACCTCCTCCACCCCCTTTTAGTGCATCTCAATCTACATTTTCTCCTTTTAGTAGAGCTCCCCCACCCCCACCTCTTCCTCCATCAGGTGGATCCCCGCCTCCACCTCCACCTCCTCCTCCTCCAATGTCGGGAGCCCCTCCACCGCCTCCTCCTCCTCCTCCAATGTCTAGAGCCCCTCCACCTCCTCCAATGTATGGAGCTCCTCCACCTCCTCCTCCAATGTCTAGAGCCCCTCCGCCTCCACCACCTCCAATGTCTAGAGCCCCTCCGCCTCCACCACCTCCAATGTCTAGAGCCCCTCCGCCTCCACCTCCTCCGATGTCTAGAGCCCCTCCTCCACCTCCTCCGATGCACGGGGCACCACCACCGCCACCACCTCCTGGTGGTCGAGGCCCTCCTCCTCCCCCACCACCTAGTGGTCGTGGCCCGCCTCCTCCCCCTCCTCCTGGTGGCCGAGGCCCACCTCCTCCACCTCTTCCTGGTGGTGCACCTCCACCACCACCACCCTTAGGTTCCAAAGGTGCAAGTGTTGGACCTGCACGCCCTGGTCCAGCGGCACCAGGTCGTGGTGGATATGCACGCCCTGGTGCAGTGGCACCCCGGCGATCCTCCTTAAAGCCTTTGCATTGGAGTAAGGTTACAAGGGCATTGCAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAACTGCAAATTGCACCAGAGTTTGATGTTTCAGAGCTAGAAAAACTTTTCTCTGCTAATGTTCCAAAACCTACTGATTCAAGTGGAAAATCTGGAGGGAGGCGCAAGTCTACTGGATCTAAACCTGACAAAGTTCACTTGGTTGACCTAAGGAGGGCCAATAATACGGAAATCATGCTAACTAAGGTTAAGATGCCACTCCCTGATATGATGGCTGCAGTACTGGCTTTGGATGACTCGGTATTAGATGTTGATCAGGTGGAAAATCTCATTAAGTTTTGTCCCACCAAAGAGGAAATGGAACTTTTGAAGGCATACACTGGTGACAAGGAGATTTTGGGGAAGTGTGAACAGTTTTTTTTGGAGCTGATGAAGGTGCCGAGGGTGGAGTCAAAATTAAGAGTATTCGCTTTCAAAATTCAGTTTCAGGCTCAGGTTACAGAATTTAGGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGAAAGTCTGTCAAACTAAAGGACATCATGAAGAAAATTCTTTTTTTGGGTAATACATTGAATCAGGGAACAGCAAGAGGATCTGCGGTTGGATTTAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAATAAGATGACACTGATGCATTATCTTTGCAAGGTGCTAGCTGAAAGGTCGCCTGGACTCCTTGATTTTCACAAAGACCTTGTTAGCCTGGAAGGTGCCACTAAGATACAATTGAAATCATTAGCAGAAGAGATGCAGGCAATCACCAAGGGATTAGAAAAGGTTAAACAAGAGCTTGCTGGATCGGAAAATGATGGACCTGTGTCGGAAGTTTTCTGTAAGACGTTGAAAGGATTCATTACGGTAGCTGAGTCAGATGTGGCAGATCTAATAACACTATATTCTACAGTGGGTAAAAATGCAGATGCACTTGCACAGTATTTTGGCGAGGATCCTGCTCGATGCCCATGTGAGCAAGTTACTGCAACTCTATTAAATTTTATAAGGTTGTTCCGGAAAGCACATGAAGAGAATTGCAAACAAGCAGAATTAGAGAAGAAGAAAGCCGAGAAAGAGGCTGAAATGGAGAAGGCTAAGGGCGTTAACTTAACAAAGAAGAGTGCAAAAGATAGTTGA 4632 0.4678 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYRVYMGGVVAQLQDHFPEASFMVFNFREGERRTQVSDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGEQKTLEMVYKQAPRELLHLLTPLNPQPSQFRYLQYISRRHLGSEWPPSETPLYLDCLILRDLTVFDDGKGFRPVVRVYGPDPSKPANRSSKLLFSTSNSKKHARHYQQAECMLVKIDIHYRVQGDVVLECINLNEDFTGEETMFRIMFHTAFVRSNILMLNRDEIDIMWDAKDQYPKDFKAEVLFLDADAVIHDVNTVLVCEDANETESADIENASPEEFYEVEEIFSNAIDAQESKADDDSHTLHDNAVGGENHKGILREDSDPHAFQDCTPDYGILKQVGKMDSGINAVKDISVDDVNYKFNESMDSDPQAVKDIAMDDGEIKSTSTAITYDMTIPLEIKEIPEDADRGSDITPNKFDEDNEATEKELDYKEGQPMPDSSKQKSGKLLPSTAKKQFPSNSKPGDTVGKQKIKETAAFQAKQAKPTAVTRWIPSNKGSYTNSMHVYYPPSRINSAPPGLSNLTTSKEKMEDNKARPSSAPFGSAAGVSADMKNDPKSRKVATSKSFGHTVSEIDAKCPPSPPSKETSLKSATQAEEQSSEQLQQPPPRPSPPPPPPPPPPPLTSFSRQDIWVNLQPATSPSLPPPPPPPPSWKFVASSIVGETYGSLPLSPPTLPFASSEITYKFSEVSTAVTQSRPPPPPPPPPPIPPPRYEVSTIPPPPPPPPPPPTVPPTKHGISSIPPPPPSFPMSSSNMSPFLPPPIASHKAPPPPPPPPPPPFANSYIGSPTPPPPPFTNASQAPPPPTPPPPPFTNAPPTMPPPPPPPPPPPPPFTSAPPVPPPPPPPPFSASQSTFSPFSRAPPPPPLPPSGGSPPPPPPPPPPMSGAPPPPPPPPPMSRAPPPPPMYGAPPPPPPMSRAPPPPPPPMSRAPPPPPPPMSRAPPPPPPPMSRAPPPPPPMHGAPPPPPPPGGRGPPPPPPPSGRGPPPPPPPGGRGPPPPPLPGGAPPPPPPLGSKGASVGPARPGPAAPGRGGYARPGAVAPRRSSLKPLHWSKVTRALQGSLWEELQRHGELQIAPEFDVSELEKLFSANVPKPTDSSGKSGGRRKSTGSKPDKVHLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDDSVLDVDQVENLIKFCPTKEEMELLKAYTGDKEILGKCEQFFLELMKVPRVESKLRVFAFKIQFQAQVTEFRKSLNTVNSACEEVRKSVKLKDIMKKILFLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNNKMTLMHYLCKVLAERSPGLLDFHKDLVSLEGATKIQLKSLAEEMQAITKGLEKVKQELAGSENDGPVSEVFCKTLKGFITVAESDVADLITLYSTVGKNADALAQYFGEDPARCPCEQVTATLLNFIRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGVNLTKKSAKDS 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04063 1543 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 779 1136 - -
Trre16g04063 1543 Coils Coil 1504 1538 - -
Trre16g04063 1543 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1204 1531 - -
Trre16g04063 1543 PANTHER FORMIN-J 1044 1537 - -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 1183 1197 - -
Trre16g04063 1543 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 580 617 - -
Trre16g04063 1543 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Trre16g04063 1543 Gene3D Protein tyrosine phosphatase superfamily 8 192 IPR029021 -
Trre16g04063 1543 SMART PTEN_C2_2 198 1241 IPR014020 -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 386 417 - -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 494 529 - -
Trre16g04063 1543 Gene3D Formin, FH2 domain 1127 1515 IPR042201 -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 1520 1543 - -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 786 842 - -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 675 695 - -
Trre16g04063 1543 Gene3D - 197 341 - -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 1181 1206 - -
Trre16g04063 1543 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 530 558 - -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 696 716 - -
Trre16g04063 1543 FunFam Formin-like protein 1128 1515 - -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 494 746 - -
Trre16g04063 1543 SMART it6_source 585 1543 IPR015425 -
Trre16g04063 1543 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1128 1529 IPR015425 -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 949 1106 - -
Trre16g04063 1543 CDD PTP_PTEN-like 16 190 - -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 853 942 - -
Trre16g04063 1543 MobiDBLite consensus disorder prediction 730 745 - -
Trre16g04063 1543 Pfam Formin Homology 2 Domain 1134 1503 IPR015425 -
Trre16g04063 1543 Coils Coil 1410 1437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04063 Trre-Chr16 45780678 45790783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04063 1 612 FH2 protein (formin) Gene Family AT5G07740 61.389 0.0 756