Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04062 ATGGCGCTGTTCAGAAGATTCTTCTACCGGAAACCACCGGATCGCCTTTTGGAGATCTCTGAGAGAGTTTATGTTTTTGATTGTTGCTTCTCCACGGACGTCTTGGAAGAAGATGAATACAGAGTTTATATGGGGGGAGTTGTGGCTCAGCTACAGGATCACTTTCCGGAAGCTTCTTTCATGGTGTTCAACTTCAGAGAAGGGGAGAGACGCACCCAAGTCTCGGACATACTTTCTCAGTATGACATGACAGTTATGGAGTATCCTCGGCAATATGAAGGTTGTCCCCTTCTACCTCTAGAGATGATCCATCACTTTCTTCGATCAAGTGAAAGCTGGCTGTCTTTGGAGGGGCAGCAGAATGTGCTTTTGATGCACTGCGAAAGAGGAGGTTGGCCTGTGCTGGCATTCATGCTAGCCGGTCTTTTGTTATACCGGAAACAGTACACTGGAGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCCAGAGAACTACTCCACCTTTTAACTCCTTTGAACCCACAGCCTTCTCAGTTCAGATATCTTCAGTACATTTCAAGGAGACATCTGGGTTCTGAGTGGCCACCATCAGAAACACCCTTGTATCTGGATTGTCTGATTCTTAGAGACCTTACAGTATTTGATGATGGAAAAGGTTTCAGGCCTGTTGTGCGTGTTTATGGCCCAGACCCTTCAAAACCTGCCAATAGAAGTTCAAAGCTTCTTTTTTCAACCTCAAACTCCAAAAAGCATGCTCGACACTATCAACAGGCAGAGTGTATGCTTGTGAAGATTGATATACATTATCGTGTTCAAGGAGATGTAGTTCTCGAGTGCATAAATTTAAATGAAGATTTTACTGGTGAGGAGACGATGTTTAGAATTATGTTCCATACTGCATTTGTGCGGTCAAATATATTGATGTTGAACCGTGATGAAATTGATATTATGTGGGATGCAAAGGATCAATATCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCCGATGCTGTTATACATGATGTGAACACAGTCTTGGTGTGTGAAGATGCAAATGAGACAGAAAGTGCTGATATAGAAAATGCTTCACCTGAGGAATTCTATGAAGTGGAAGAGATTTTCAGCAATGCAATTGATGCACAGGAAAGTAAGGCAGATGATGATTCTCATACCTTACATGACAATGCAGTGGGTGGTGAAAATCATAAAGGGATCTTGAGGGAGGATTCGGATCCTCATGCTTTTCAGGATTGCACGCCAGATTATGGGATTCTCAAACAGGTTGGAAAGATGGATTCCGGTATTAATGCTGTGAAAGATATATCTGTTGACGATGTTAACTACAAGTTCAATGAGAGCATGGATTCAGATCCTCAAGCAGTGAAGGACATTGCCATGGATGATGGAGAAATTAAGTCAACTTCCACTGCCATCACTTATGATATGACGATACCTCTGGAAATAAAGGAAATCCCTGAGGACGCTGATCGGGGATCAGACATTACGCCGAACAAATTTGATGAAGATAACGAAGCAACAGAAAAGGAATTAGATTACAAGGAGGGGCAGCCTATGCCTGATAGCTCCAAACAAAAATCTGGTAAACTACTTCCATCTACTGCTAAGAAACAATTTCCATCAAACTCAAAGCCAGGAGATACTGTTGGAAAACAAAAGATTAAAGAAACCGCTGCTTTTCAGGCAAAACAAGCTAAACCAACTGCAGTGACGAGGTGGATTCCTTCTAACAAGGGTTCTTACACAAATTCGATGCATGTATATTATCCACCATCAAGGATTAATAGTGCACCACCTGGACTGTCAAATTTAACCACTTCAAAGGAGAAAATGGAAGATAACAAAGCAAGACCTTCATCTGCTCCTTTTGGTTCCGCGGCAGGTGTTTCTGCTGACATGAAAAATGACCCGAAAAGTCGGAAGGTGGCCACTTCGAAATCGTTTGGCCACACAGTATCAGAAATTGATGCAAAATGTCCACCATCGCCACCATCAAAAGAGACATCTCTTAAGTCAGCTACTCAGGCAGAAGAACAGAGCTCAGAGCAATTGCAACAGCCTCCCCCACGGCCTTCTCCCCCTCCCCCACCACCACCTCCGCCACCACCCTTAACATCATTTAGTAGACAAGACATTTGGGTGAATTTACAGCCTGCAACTTCTCCGTCACTTCCACCTCCGCCACCACCTCCACCCTCCTGGAAGTTTGTGGCTTCATCAATAGTTGGAGAGACTTATGGTTCTTTACCACTCTCGCCACCTACTCTTCCCTTTGCAAGCAGTGAAATTACATATAAATTTTCTGAAGTATCAACTGCAGTGACCCAGTCAAGGCCTCCCCCTCCTCCACCACCACCGCCCCCAATCCCCCCTCCAAGGTACGAAGTATCAACCATTCCTCCTCCTCCACCACCACCACCACCACCACCAACAGTACCTCCTACAAAGCATGGAATTTCATCAATACCTCCTCCTCCCCCCTCGTTTCCTATGTCTTCATCAAACATGTCCCCATTCTTGCCACCTCCAATTGCATCTCATAAAGCTCCACCCCCACCGCCACCCCCACCTCCGCCACCTTTTGCTAATTCATATATAGGTTCACCTACACCACCTCCACCTCCTTTTACTAATGCTTCACAAGCTCCACCCCCACCTACACCACCTCCACCGCCCTTTACTAATGCTCCCCCAACAATGCCTCCACCTCCTCCTCCACCACCACCACCACCACCTCCTTTTACTAGTGCCCCACCAGTACCGCCCCCACCTCCTCCACCCCCTTTTAGTGCATCTCAATCTACATTTTCTCCTTTTAGTAGAGCTCCCCCACCCCCACCTCTTCCTCCATCAGGTGGATCCCCGCCTCCACCTCCACCTCCTCCTCCTCCAATGTCGGGAGCCCCTCCACCGCCTCCTCCTCCTCCTCCAATGTCTAGAGCCCCTCCACCTCCTCCAATGTATGGAGCTCCTCCACCTCCTCCTCCAATGTCTAGAGCCCCTCCGCCTCCACCACCTCCAATGTCTAGAGCCCCTCCGCCTCCACCACCTCCAATGTCTAGAGCCCCTCCGCCTCCACCTCCTCCGATTGGTCGTGGCCCGCCTCCTCCCCCTCCTCCTGGTGGCCGAGGCCCACCTCCTCCACCTCTTCCTGGTGGTGCACCTCCACCACCACCACCCTTAGGTTCCAAAGGTGCAAGTGTTGGACCTGCACGCCCTGGTCCAGCGGCACCAGGTCGTGGTGGATATGCACGCCCTGGTGCAGTGGCACCCCGGCGATCCTCCTTAAAGCCTTTGCATTGGAGTAAGGTTACAAGGGCATTGCAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAACTGCAAATTGCACCAGAGTTTGATGTTTCAGAGCTAGAAAAACTTTTCTCTGCTAATGTTCCAAAACCTACTGATTCAAGTGGAAAATCTGGAGGGAGGCGCAAGTCTACTGGATCTAAACCTGACAAAGTTCACTTGGTTGACCTAAGGAGGGCCAATAATACGGAAATCATGCTAACTAAGGTTAAGATGCCACTCCCTGATATGATGGCTGCAGTACTGGCTTTGGATGACTCGGTATTAGATGTTGATCAGGTGGAAAATCTCATTAAGTTTTGTCCCACCAAAGAGGAAATGGAACTTTTGAAGGCATACACTGGTGACAAGGAGATTTTGGGGAAGTGTGAACAGTTTTTTTTGGAGCTGATGAAGGTGCCGAGGGTGGAGTCAAAATTAAGAGTATTCGCTTTCAAAATTCAGTTTCAGGCTCAGGTTACAGAATTTAGGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGAAAGTCTGTCAAACTAAAGGACATCATGAAGAAAATTCTTTTTTTGGGTAATACATTGAATCAGGGAACAGCAAGAGGATCTGCGGTTGGATTTAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAATAAGATGACACTGATGCATTATCTTTGCAAGGTGCTAGCTGAAAGGTCGCCTGGACTCCTTGATTTTCACAAAGACCTTGTTAGCCTGGAAGGTGCCACTAAGATACAATTGAAATCATTAGCAGAAGAGATGCAGGCAATCACCAAGGGATTAGAAAAGGTTAAACAAGAGCTTGCTGGATCGGAAAATGATGGACCTGTGTCGGAAGTTTTCTGTAAGACGTTGAAAGGATTCATTACGGTAGCTGAGTCAGATGTGGCAGATCTAATAACACTATATTCTACAGTGGGTAAAAATGCAGATGCACTTGCACAGTATTTTGGCGAGGATCCTGCTCGATGCCCATGTGAGCAAGTTACTGCAACTCTATTAAATTTTATAAGGTTGTTCCGGAAAGCACATGAAGAGAATTGCAAACAAGCAGAATTAGAGAAGAAGAAAGCCGAGAAAGAGGCTGAAATGGAGAAGGCTAAGGGCGTTAACTTAACAAAGAAGAGTGCAAAAGATAGTTGA 4536 0.463 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYRVYMGGVVAQLQDHFPEASFMVFNFREGERRTQVSDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGEQKTLEMVYKQAPRELLHLLTPLNPQPSQFRYLQYISRRHLGSEWPPSETPLYLDCLILRDLTVFDDGKGFRPVVRVYGPDPSKPANRSSKLLFSTSNSKKHARHYQQAECMLVKIDIHYRVQGDVVLECINLNEDFTGEETMFRIMFHTAFVRSNILMLNRDEIDIMWDAKDQYPKDFKAEVLFLDADAVIHDVNTVLVCEDANETESADIENASPEEFYEVEEIFSNAIDAQESKADDDSHTLHDNAVGGENHKGILREDSDPHAFQDCTPDYGILKQVGKMDSGINAVKDISVDDVNYKFNESMDSDPQAVKDIAMDDGEIKSTSTAITYDMTIPLEIKEIPEDADRGSDITPNKFDEDNEATEKELDYKEGQPMPDSSKQKSGKLLPSTAKKQFPSNSKPGDTVGKQKIKETAAFQAKQAKPTAVTRWIPSNKGSYTNSMHVYYPPSRINSAPPGLSNLTTSKEKMEDNKARPSSAPFGSAAGVSADMKNDPKSRKVATSKSFGHTVSEIDAKCPPSPPSKETSLKSATQAEEQSSEQLQQPPPRPSPPPPPPPPPPPLTSFSRQDIWVNLQPATSPSLPPPPPPPPSWKFVASSIVGETYGSLPLSPPTLPFASSEITYKFSEVSTAVTQSRPPPPPPPPPPIPPPRYEVSTIPPPPPPPPPPPTVPPTKHGISSIPPPPPSFPMSSSNMSPFLPPPIASHKAPPPPPPPPPPPFANSYIGSPTPPPPPFTNASQAPPPPTPPPPPFTNAPPTMPPPPPPPPPPPPPFTSAPPVPPPPPPPPFSASQSTFSPFSRAPPPPPLPPSGGSPPPPPPPPPPMSGAPPPPPPPPPMSRAPPPPPMYGAPPPPPPMSRAPPPPPPPMSRAPPPPPPPMSRAPPPPPPPIGRGPPPPPPPGGRGPPPPPLPGGAPPPPPPLGSKGASVGPARPGPAAPGRGGYARPGAVAPRRSSLKPLHWSKVTRALQGSLWEELQRHGELQIAPEFDVSELEKLFSANVPKPTDSSGKSGGRRKSTGSKPDKVHLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDDSVLDVDQVENLIKFCPTKEEMELLKAYTGDKEILGKCEQFFLELMKVPRVESKLRVFAFKIQFQAQVTEFRKSLNTVNSACEEVRKSVKLKDIMKKILFLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNNKMTLMHYLCKVLAERSPGLLDFHKDLVSLEGATKIQLKSLAEEMQAITKGLEKVKQELAGSENDGPVSEVFCKTLKGFITVAESDVADLITLYSTVGKNADALAQYFGEDPARCPCEQVTATLLNFIRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGVNLTKKSAKDS 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04062 1511 Gene3D Protein tyrosine phosphatase superfamily 8 192 IPR029021 -
Trre16g04062 1511 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Trre16g04062 1511 PANTHER FORMIN-J 1022 1505 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 1151 1165 - -
Trre16g04062 1511 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Trre16g04062 1511 Gene3D - 197 341 - -
Trre16g04062 1511 Coils Coil 1472 1506 - -
Trre16g04062 1511 FunFam Formin-like protein 1096 1483 - -
Trre16g04062 1511 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 949 1074 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 580 617 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 386 417 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 494 529 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 786 842 - -
Trre16g04062 1511 Pfam Formin Homology 2 Domain 1102 1471 IPR015425 -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 779 1104 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 675 695 - -
Trre16g04062 1511 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 1149 1174 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 1488 1511 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 530 558 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 696 716 - -
Trre16g04062 1511 Gene3D Formin, FH2 domain 1095 1483 IPR042201 -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 494 746 - -
Trre16g04062 1511 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1096 1497 IPR015425 -
Trre16g04062 1511 SMART PTEN_C2_2 198 338 IPR014020 -
Trre16g04062 1511 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1172 1499 - -
Trre16g04062 1511 CDD PTP_PTEN-like 16 190 - -
Trre16g04062 1511 SMART it6_source 585 1511 IPR015425 -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 853 942 - -
Trre16g04062 1511 Coils Coil 1378 1405 - -
Trre16g04062 1511 MobiDBLite consensus disorder prediction 730 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04062 Trre-Chr16 45780678 45790783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04062 1 612 FH2 protein (formin) Gene Family AT5G07740 61.389 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04062 - - psat:127073762 1305.81