Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04060 ATGGAAAAAAAGAATAAAGATCTTGTTAATATTACGATGAAACTTTCATATAATTTCTTCTCTCATTTCGTTCTTTTTCTTTTCCTTTTTGTCCCGTCTAGATCTATTTCCGTCACTGACTATAATTTTTTCGCACCTTCGGTTAATTATCTTATTGATTGTGGCTCCCCCGTTAAAACACAGCTAAACGATGGTAGAAACTTCAAATCTGATCGCGAAACTACTTCTCTCCTTTCAACGACCGAAGATATTATACTTTCGGTAGATTCCATAAACATAACAAATATATTTCCTCCTTCTTCATTGCCTTTATATCAAACTGCTAGAGCTTTCACAGATGAATCTATATACACTTTCTACATGTCCAAAACCGGTCGAATTTGGATTCGTCTTTATTTCTTCCCTTTTCCTAACCCTTCATATAATCTAACAAGTTCTATTTTCTCTGTTCATACTGATCATTTTGTTCTCTTGCATGAATTCTCTCCTACTAATAACAATTCATTTTATTTCAAAGAATATCTTGTTAATGTTCCTGACACTAGATTTTCACTCAAGTTCAAACCAAACAAAGATTCATTAGCATTCATCAATGCAATTGAAATTGTTTCAGCTCCTGATACACTTATATCAGATTCAGCAACTCAACTTTTTCCACTTGGAGAATTCAAAGGTTTGATGAATTCAGCTTTGCAAGTATCTTATAGAATAAATGTAGGTGGCATCACCATAGCTCCTGAGGATGATACCTTATCAAGAACATGGGAGCCTGATGGTTCCTATAACATTTTTCCACAAGGATCTATGAGTTTTTCTGTCTCAAATAGAAGCATAAAGTATCCAGAACAAAATGGTGTAGTTCATGTTACACCTTTGATAGCTCCAAATTCAGTATATGCAAGTTGTGTACAAATGAAAGACCCTAAAGTTATGCAACCAAATTTCAATCTTAGTTGGATGGTGAATGTTGAAAAAAGCTACTCTTATTTGATAAGAATGCATTTTTGTGACATTGTTAGTAAAAGTCTTAATCAATTGTATTTCAATGTATACATTAATGGGATTGAAGGTGTGCATGCTTTGGATCTTTCATCTCAAACAAAAGCTCTATCAACAGCTTTTTACAAGGATTTTGTGATTGGTTCATCTAATATCACAAATGGTTCTATCTTGATTCAAGTAGGTCCACCTAATCTTCAACTAAGTACAACCAATGCAATTTTGAATGGAATTGAGGTTATGAAAATGAGCAATAGTGCTGATAGTTTGGATGGTTTTTTCTCTGTTGATGGAGAATACATAGGACCAAATTTAACATCTAAGGTAATGAAAATTGTTGCTATTGTTGGTTTGGTTTTGGCTATGATAGCATTGTTGTTACTAGCAATAATGTATATTAGGTGGTTAAGGAGACCTTTAGATTGGGAAGAATGTAGAAGTTTATCTTCATGGATTCTTCCTCTTCATTCAAGATGTAAGAAAAGTTGCAAAACAAATTCAAACACAACTGATTCTTCACCTAAGAGTAAGAATGGTGGTCATCATTCTCCAAGAGGGCCAGAAAAGTTCTTCCATTTTGTCGAATTACAACGAGCTACTAATAACTTTGATGAAAAGAGAGTTATTGGTGTTGGAGGATTTGGTAAAGTGTATCTTGGTACATTGGAAGATGGAACAGATGTTGCTATAAAAAGAGGAACTGGTGGTTCAGGACAAGGAATGAATGAGTTTATAACAGAACTAAACATGCTTTCTAAGATGCGACATCGCCATTTAGTTTCACTAATAGGTTTCTGTGATGAAAATTCAGAGATGGTTCTTGTATATGATTACATGTCTAATGGCCCTTTTCGTTCGCACCTTTATGGCTCCAACTTTTCTCCTTTGCCTTGGCAAAAAAGGCTCGAGATATGCATCGGTGCTGCTCGCGGTTTGCATTATCTCCATACAGGTGCATCTCAAAGTATCATACACCGCGATGTGAAGACGACAAATATACTATTGGATGAGAATTATGTAGCTAAGGTTTCTGATTTTGGTTTATCTAAAGCTATCCAAGATAAATCTCAAGTGAGCACTGCTGTTAAGGGAAGTTTTGGATATCTTGATCCTGAATATTTCAGAAGCCAACAACTAACTCAAAAATCTGATATATACTCATTTGGTGTTGTCCTATTTGAGGTATTGTGTGCTAGGCCAGTTGTTTGTCCTACATTGCCTATGGAACAAGCTAACTTGGCTGATTGGGTACTGCAACAATATAGAATAGGAATGCTTCATAAGATGATTGATAAAAATATAGTTGATACTATAAATCATGAATCATACAAGATTTTTTCACAAATTGGTGTGAAATGTTTAGCAGATCATGGTGTTGATAGGCCTAGTATGGGTGATGTGTTATGGCATTTGGAACATGCTTTGCAACTACAGATAGCTTCATCACATGTTGATATTGCAAGTGCTTTTCAACATGAAAATGAATATGAAAGAAATGATGATAACTCACATGGTGTAACAAGTGATGAGTCTAATAGCACAAATTCTAGTTCTGTTTTGTTTTCTCAGATAGTCAATCTTCAAGGAAGGTGA 2592 0.3468 MEKKNKDLVNITMKLSYNFFSHFVLFLFLFVPSRSISVTDYNFFAPSVNYLIDCGSPVKTQLNDGRNFKSDRETTSLLSTTEDIILSVDSINITNIFPPSSLPLYQTARAFTDESIYTFYMSKTGRIWIRLYFFPFPNPSYNLTSSIFSVHTDHFVLLHEFSPTNNNSFYFKEYLVNVPDTRFSLKFKPNKDSLAFINAIEIVSAPDTLISDSATQLFPLGEFKGLMNSALQVSYRINVGGITIAPEDDTLSRTWEPDGSYNIFPQGSMSFSVSNRSIKYPEQNGVVHVTPLIAPNSVYASCVQMKDPKVMQPNFNLSWMVNVEKSYSYLIRMHFCDIVSKSLNQLYFNVYINGIEGVHALDLSSQTKALSTAFYKDFVIGSSNITNGSILIQVGPPNLQLSTTNAILNGIEVMKMSNSADSLDGFFSVDGEYIGPNLTSKVMKIVAIVGLVLAMIALLLLAIMYIRWLRRPLDWEECRSLSSWILPLHSRCKKSCKTNSNTTDSSPKSKNGGHHSPRGPEKFFHFVELQRATNNFDEKRVIGVGGFGKVYLGTLEDGTDVAIKRGTGGSGQGMNEFITELNMLSKMRHRHLVSLIGFCDENSEMVLVYDYMSNGPFRSHLYGSNFSPLPWQKRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENYVAKVSDFGLSKAIQDKSQVSTAVKGSFGYLDPEYFRSQQLTQKSDIYSFGVVLFEVLCARPVVCPTLPMEQANLADWVLQQYRIGMLHKMIDKNIVDTINHESYKIFSQIGVKCLADHGVDRPSMGDVLWHLEHALQLQIASSHVDIASAFQHENEYERNDDNSHGVTSDESNSTNSSSVLFSQIVNLQGR 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04060 863 FunFam receptor-like protein kinase FERONIA 496 611 - -
Trre16g04060 863 Pfam Protein tyrosine and serine/threonine kinase 539 760 IPR001245 GO:0004672|GO:0006468
Trre16g04060 863 FunFam Receptor-like protein kinase FERONIA 230 418 - -
Trre16g04060 863 FunFam Receptor-like protein kinase FERONIA 612 826 - -
Trre16g04060 863 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524
Trre16g04060 863 PANTHER OS07G0166700 PROTEIN 523 811 IPR045272 GO:0004714|GO:0006468
Trre16g04060 863 SMART serkin_6 536 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04060 863 MobiDBLite consensus disorder prediction 496 517 - -
Trre16g04060 863 MobiDBLite consensus disorder prediction 496 512 - -
Trre16g04060 863 Pfam Malectin-like domain 52 416 IPR024788 -
Trre16g04060 863 MobiDBLite consensus disorder prediction 829 849 - -
Trre16g04060 863 CDD STKc_IRAK 542 805 - -
Trre16g04060 863 Gene3D - 45 206 - -
Trre16g04060 863 Gene3D - 230 418 - -
Trre16g04060 863 Gene3D Transferase(Phosphotransferase) domain 1 612 828 - -
Trre16g04060 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Trre16g04060 863 Gene3D Phosphorylase Kinase; domain 1 496 611 - -
Trre16g04060 863 FunFam Putative receptor-like protein kinase 49 206 - -
Trre16g04060 863 SUPERFAMILY Protein kinase-like (PK-like) 519 804 IPR011009 -
Trre16g04060 863 ProSiteProfiles Protein kinase domain profile. 536 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04060 Trre-Chr16 45766204 45768880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04060 44 820 Receptor kinase-like Gene Family AT5G61350 58.543 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre16g04060 Malectin_like 8e-35 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04060 - - gmx:100814982 1116.68