Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04055 ATGGAGATTGAGGAACTTATTGATTTGAATAGCAAAGAGAGTAATTGTGGTGGAAATAATAGCAAGAATGGTGATGGATTCATTGATAGGAGTAAAGTTAGGATTTTGCTTTGTGATAATGATTCCAAGAGTTCAGAAGAGGTTTTTACTCTTCTTTTGAATTGCTCTTATCAGGTTACATCCGTAAAATCAGCAAGGCAAGTTATTGATGCATTGAATGCAGAAGGGCAATATATAGATATCATACTAGCTGAAGTTGACCTTCCAACTAAAAAGGGCATGAAGATGTTGAAATACATAGCACGGGATAAAGAACTGCGCCGAATCCCTATTATAATGATGTCTGCACAAGATGAGGTATCAATTGTTGTTAAGTGCTTAAGACTCGGAGCAGCAGATTATCTAGTAAAGCCTTTGCGCACTAATGAACTGTTAAATTTGTGGACACACATGTGGAGACGGAGACGGATGCTTGGACTTACAGAGAACAACATCTGTAGTTATGATTTTGATATGGTAGCATCAGACCCAAGTGATGCCAATACAAACAGTACCACTTTGTTCTCCGATGACACAGATGACAGGTCCAAAAGAAGCACTAATCCAGAGCCTGTAATTTCAATCCAACAAGAACAAGAGGCCAGTAGTGCCACTGCTGCTGCTGCTGCTGCTGCTGTTATTGAGGAGTTTCCATATGCTCGTGCATCAGAATATCAGCCTGATGTACCCGGAATTAGTGATCGGAGAACAGGATATTTTTCATCAGGTCCAAAGAAGAGTGAACTAAGAATTGGAGAGTCATCAGCCTTTCTCACTTATGTCAAAGCAACAACAAAGAATAGCAACTTTGAAGAGACTGCCCATGTCGACAATAATGGTACTTCACAAGTGAGGGTGGAAGATATGATGAATCAAGCATGTTCTCAACAAGGGGGTATTGACCTTATAAGACATGAAAATGGAGAAACGATTGAAAGCCATTCACAAGACGACTTACCTAGAAGCAATAGTATCCCTGATTCTTTCTCTGTTGACAGATCATGTACCCCACCTGCATCAATGGAGGTTTCACAGCAAAATAATTTCAAGGAAGAACATCCACAGGGGGTGGTTCATCCAAGAAACGGAAGTTATGGTGGTTCTCAGCTCGACCAATCGGGCATGCATGCCCAACAAGCTTATCCATATTATACACCAGGAGGTTTTAATCATGTTATGATGTCATCATCAGCACAAATGTATCAAAAGAATATTCAGGACCTTCAGAGTCATGTTAGTTCATCTATGATTTCCCAGTACAATCACCTTCCCCAATGTCCACCTCATGCAACTGGGATGACACCGTTCCCGTATTTTCCAATGAGTATTTGTTTGCAAACTGGTCAGGTTTCTACAGGCCATTCATGGCCATCATTAGGAAGTTCAACTTCGTGTGAAGCAACCTTAAGAAAAGTTGATAGGAGAGAAGCAGCATTAATGAAATTTAGACAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAATTTGTGAGAAAGTTGAACGGTATTAATGTGGATCTAAATGGACAACCTGTTTCCACCGACTATGATAATGAGGAGGAGGAGGAAGAAAGCAATGGCGCTAGAGATTCCTCTCCTAAGGATACTTGA 1704 0.4067 MEIEELIDLNSKESNCGGNNSKNGDGFIDRSKVRILLCDNDSKSSEEVFTLLLNCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPTKKGMKMLKYIARDKELRRIPIIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLTENNICSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNPEPVISIQQEQEASSATAAAAAAAVIEEFPYARASEYQPDVPGISDRRTGYFSSGPKKSELRIGESSAFLTYVKATTKNSNFEETAHVDNNGTSQVRVEDMMNQACSQQGGIDLIRHENGETIESHSQDDLPRSNSIPDSFSVDRSCTPPASMEVSQQNNFKEEHPQGVVHPRNGSYGGSQLDQSGMHAQQAYPYYTPGGFNHVMMSSSAQMYQKNIQDLQSHVSSSMISQYNHLPQCPPHATGMTPFPYFPMSICLQTGQVSTGHSWPSLGSSTSCEATLRKVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPVSTDYDNEEEEEESNGARDSSPKDT 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04055 567 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Trre16g04055 567 SMART REC_2 33 148 IPR001789 GO:0000160
Trre16g04055 567 MobiDBLite consensus disorder prediction 330 365 - -
Trre16g04055 567 Pfam CCT motif 488 530 IPR010402 GO:0005515
Trre16g04055 567 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
Trre16g04055 567 ProSiteProfiles CCT domain profile. 488 530 IPR010402 GO:0005515
Trre16g04055 567 MobiDBLite consensus disorder prediction 325 385 - -
Trre16g04055 567 Gene3D - 33 238 - -
Trre16g04055 567 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 244 IPR045279 GO:0009736
Trre16g04055 567 MobiDBLite consensus disorder prediction 538 567 - -
Trre16g04055 567 SUPERFAMILY CheY-like 29 158 IPR011006 -
Trre16g04055 567 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04055 Trre-Chr16 45711358 45715337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04055 22 566 Response Regulator Gene Family AT5G61380 50.949 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre16g04055 Response_reg 1.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04055 K12127 - gmx:100786522 865.144