Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04054 ATGGAGATTGAGGAACTTATTGATTTGAATAGCAAAGAGAGTAATTGTGGTGGAAATAATAGCAAGAATGGTGATGGATTCATTGATAGGAGTAAAGTTAGGATTTTGCTTTGTGATAATGATTCCAAGAGTTCAGAAGAGGTTTTTACTCTTCTTTTGAATTGCTCTTATCAGGTTACATCCGTAAAATCAGCAAGGCAAGTTATTGATGCATTGAATGCAGAAGGGCAATATATAGATATCATACTAGCTGAAGTTGACCTTCCAACTAAAAAGGGCATGAAGATGTTGAAATACATAGCACGGGATAAAGAACTGCGCCGAATCCCTATTATAATGATGTCTGCACAAGATGAGGTATCAATTGTTGTTAAGTGCTTAAGACTCGGAGCAGCAGATTATCTAGTAAAGCCTTTGCGCACTAATGAACTGTTAAATTTGTGGACACACATGTGGAGACGGAGACGGATGCTTGGACTTACAGAGAACAACATCTGTAGTTATGATTTTGATATGGTAGCATCAGACCCAAGTGATGCCAATACAAACAGTACCACTTTGTTCTCCGATGACACAGATGACAGGTCCAAAAGAAGCACTAATCCAGAGCCTGTAATTTCAATCCAACAAGAACAAGAGGCCAGTAGTGCCACTGCTGCTGCTGCTGCTGCTGCTGTTATTGAGGAGTTTCCATATGCTCGTGCATCAGAATATCAGCCTGATGTACCCGGAATTAGTGATCGGAGAACAGGTTCTTTAGGACAACATCCGCCATGCAACAGAGTTACAGATGGATATTTTTCATCAGGTCCAAAGAAGAGTGAACTAAGAATTGGAGAGTCATCAGCCTTTCTCACTTATGTCAAAGCAACAACAAAGAATAGCAACTTTGAAGAGACTGCCCATGTCGACAATAATGGTACTTCACAAGTGAGGGTGGAAGATATGATGAATCAAGCATGTTCTCAACAAGGGGGTATTGACCTTATAAGACATGAAAATGGAGAAACGATTGAAAGCCATTCACAAGACGACTTACCTAGAAGCAATAGTATCCCTGATTCTTTCTCTGTTGACAGATCATGTACCCCACCTGCATCAATGGAGGTTTCACAGCAAAATAATTTCAAGGAAGAACATCCACAGGGGGTGGTTCATCCAAGAAACGGAAGTTATGGTGGTTCTCAGCTCGACCAATCGGGCATGCATGCCCAACAAGCTTATCCATATTATACACCAGGAGGTTTTAATCATGTTATGATGTCATCATCAGCACAAATGTATCAAAAGAATATTCAGGACCTTCAGAGTCATGTTAGTTCATCTATGATTTCCCAGTACAATCACCTTCCCCAATGTCCACCTCATGCAACTGGGATGACACCGTTCCCGTATTTTCCAATGAGTATTTGTTTGCAAACTGGTCAGGTTTCTACAGGCCATTCATGGCCATCATTAGGAAGTTCAACTTCGTGTGAAGCAACCTTAAGAAAAGTTGATAGGAGAGAAGCAGCATTAATGAAATTTAGACAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAATTTGTGAGAAAGTTGAACGGTATTAATGTGGATCTAAATGGACAACCTGTTTCCACCGACTATGATAATGAGGAGGAGGAGGAAGAAAGCAATGGCGCTAGAGATTCCTCTCCTAAGGATACTTGA 1746 0.4078 MEIEELIDLNSKESNCGGNNSKNGDGFIDRSKVRILLCDNDSKSSEEVFTLLLNCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPTKKGMKMLKYIARDKELRRIPIIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLTENNICSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNPEPVISIQQEQEASSATAAAAAAAVIEEFPYARASEYQPDVPGISDRRTGSLGQHPPCNRVTDGYFSSGPKKSELRIGESSAFLTYVKATTKNSNFEETAHVDNNGTSQVRVEDMMNQACSQQGGIDLIRHENGETIESHSQDDLPRSNSIPDSFSVDRSCTPPASMEVSQQNNFKEEHPQGVVHPRNGSYGGSQLDQSGMHAQQAYPYYTPGGFNHVMMSSSAQMYQKNIQDLQSHVSSSMISQYNHLPQCPPHATGMTPFPYFPMSICLQTGQVSTGHSWPSLGSSTSCEATLRKVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPVSTDYDNEEEEEESNGARDSSPKDT 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04054 581 ProSiteProfiles CCT domain profile. 502 544 IPR010402 GO:0005515
Trre16g04054 581 SUPERFAMILY CheY-like 29 158 IPR011006 -
Trre16g04054 581 SMART REC_2 33 148 IPR001789 GO:0000160
Trre16g04054 581 MobiDBLite consensus disorder prediction 339 399 - -
Trre16g04054 581 MobiDBLite consensus disorder prediction 552 581 - -
Trre16g04054 581 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
Trre16g04054 581 Pfam CCT motif 502 544 IPR010402 GO:0005515
Trre16g04054 581 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Trre16g04054 581 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 248 IPR045279 GO:0009736
Trre16g04054 581 MobiDBLite consensus disorder prediction 344 379 - -
Trre16g04054 581 Gene3D - 33 238 - -
Trre16g04054 581 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04054 Trre-Chr16 45711358 45715337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04054 22 580 Response Regulator Gene Family AT5G61380 51.823 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre16g04054 Response_reg 1.6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04054 K12127 - gmx:100786522 880.552