Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g04047 | ATGGAAACTGGACGAAACGAAAGACCCTTTTTGGGTTTTCGTTTTGTCTCCAAATTTTTATTATGCGCCATTTCTGGAACTCTCACTGCATCTTTTGCCCTTGCTGGGGCCCTCACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACCAAGAGTGGTTTTCTCCGGGGAGTTTCATTGGGTGCTATTGCGGGGGCTATACTCTCCGTTGAGGTCCTGGAAGCTTCTCGTGCGTATTGGTGTATGGAGCAAACCGGTTCACGTGGTGCATCATCTATGGCAGATTTCATAGAAGAACTTGTTCGTGGAAGGCTTGTAGAAGAATCACTAACACCTGCTATTTTAACCGCATACAATTTGCAAGTTGGAATTGCTAATAACACTGGCTATGATGAAATTCATGATGTTCATAGCTTAGTAGCATCCAGAGGATTGTCAGGTGATTCGTTGAATAAGCTACCGCACCATATGATTTTGAAGGACATGAAGGCAGAGGATACTTTCTGCGCAATATGTTTGCAGGATATTGAAGTTGGTGAAATCGCAAGAAGCTTACCTCGTTGTGATCATACATTTCACTTGATATGCGTGGACAAGTGGCTTGTCAAGAACGATTCGTGTCCTATTTGCAGACAGAATGTGTAG | 648 | 0.4398 | METGRNERPFLGFRFVSKFLLCAISGTLTASFALAGALTGAIAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQVGIANNTGYDEIHDVHSLVASRGLSGDSLNKLPHHMILKDMKAEDTFCAICLQDIEVGEIARSLPRCDHTFHLICVDKWLVKNDSCPICRQNV | 215 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g04047 | 215 | SUPERFAMILY | RING/U-box | 151 | 215 | - | - | |
Trre16g04047 | 215 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 15 | 214 | IPR044523 | - | |
Trre16g04047 | 215 | SMART | ring_2 | 170 | 211 | IPR001841 | - | |
Trre16g04047 | 215 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 215 | IPR013083 | - | |
Trre16g04047 | 215 | ProSiteProfiles | Zinc finger RING-type profile. | 170 | 212 | IPR001841 | - | |
Trre16g04047 | 215 | Pfam | Ring finger domain | 170 | 212 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g04047 | Trre-Chr16 | 45655463 | 45657913 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g04047 | 16 | 215 | C3H Transcription Factor Family | AT1G74410 | 57.711 | 2.24e-75 | 225 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g04047 | - | - | gmx:100800105 | 343.969 |