Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04043 ATGGAAAACTTTGTGTTATCTTGTAACAAGGAAGATGAGAAAATGGATTTGCCTCCTGGTTTTCGATTTCATCCTACTGATGAAGAGCTTATAAGTCATTATCTTTACAAAAAAGTTCTTGATTCAAATTTCTCTGCTAGAGCTATTGGAGATGTAGACCTCAACAAATCTGAACCTTGGGATTTACCATGGAAAGCTAAAATGGGGGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGGTTGAGGACAAACAGAGCTACAGAACAAGGTTATTGGAAAGCTACAGGGAAAGATAAAGAGATTTTCAAAGGAAAATCTTTGGTTGGAATGAAGAAGACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTCATGCATGAATATCGACTTGAGGGTAAATACTCTGTTCATAATCTTCCCAAATCTGCAAAGAACGAGTGGGTTATATGTAGGGTGTTTCAGAAGAGTTCAGCTGGTAAAAAAACACATATTTCGGGGATAATGAGGTTGGATCCACTTGGTAACAATTTGGGTTGTTCCGTTTTGCCACCCCTTACTGATACGTCACAATCCTTAGGGAAAATCAAACAATTGAATGATTCGGCTTACGTGCCCTGCTTCTCCAATTCAATTGATGTTCAAAGAAACCAAGGAGGGATCTTTGATTCATTCAACAACTCAATTTACGGTGTTTCATCGAATAATAATCAACTAGATATTTTTCCAAGAATTTCATCGTCCAATGCTTCGTTATACTCTAATAATCAATCTGCGGTTAATTTGCAATTTCCTGGCTCTATTTGTGGTATGCAAGACCAAGCATTTTTAAGAGCTTTGTATGAAAACAATGGTTTTAAGACTGAGAGACAACAACAAATTATGAGTGTTTCACAGGAAACAGATTTAACTACTGATATGAATGGTGAAAGATGTTCTGTTGTGTCAAATTTTGATATTGGTAGAAGGACTTTTGAGAATAATCGTCCACCACCTGCTTCTGTTGATTTTGATGGTACTATGTGGAATTACTAA 1068 0.3642 MENFVLSCNKEDEKMDLPPGFRFHPTDEELISHYLYKKVLDSNFSARAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEQGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKYSVHNLPKSAKNEWVICRVFQKSSAGKKTHISGIMRLDPLGNNLGCSVLPPLTDTSQSLGKIKQLNDSAYVPCFSNSIDVQRNQGGIFDSFNNSIYGVSSNNNQLDIFPRISSSNASLYSNNQSAVNLQFPGSICGMQDQAFLRALYENNGFKTERQQQIMSVSQETDLTTDMNGERCSVVSNFDIGRRTFENNRPPPASVDFDGTMWNY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04043 355 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Trre16g04043 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 260 - -
Trre16g04043 355 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Trre16g04043 355 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Trre16g04043 355 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Trre16g04043 355 FunFam NAC domain-containing protein 100-like 26 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04043 Trre-Chr16 45602210 45603572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04043 15 355 NAC Transcription Factor Family AT5G07680 56.522 1.03e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g04043 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04043 - - cam:101502392 618.616