Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04040 ATGGGGAGAGTTAAACTGAAGATAAAGAAATTGGAGAGCACAAGCAACCGACATGTGACTTATTCGAAGCGGAAAAGTGGAATCTTAAAAAAAGCAAAGGAATTATCAATTCTATGTGATATTGATATTCTTCTTCTCATGTTTTCTCCCACAGAAAAACCTACCTTACTACAAGGAGAGCGCAGCAATATGGAGGAGATCATTTCAAAGTTTGCCCAACTTAGTCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGTCTTGAAGCACTGAAAAAGACCTTCAAGAAATTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACAATGGAGGAATTAAGTCATCAAGTGAGAGTTTTACAAGCTCAACTCGCAGAAATACAACAGAGACTGAGTTATTGGAGTAATCTAGAGAAGATCAATAACTTGGAACATCTTAGACAAATGGAAGACTCGCTCAGGGAATCAATCAATCGACTATGTATACAAAAGGAAAATTTAAGAAAGCGACAACTAATGTCACTTGATTGTGCTAACCAGTTACCCGAAGGGATGACTTTACCTTTGATGATGGCTGGTCTACAAGAATCTCAACCCTTGTCTTGGCTTCTAAGTGGTGATAATCACCAGTTGATGTTACCTAATGAATCAAAATTTCTGCCATTTAGTGATAATGGCAATAGAGATGTTGAGTGCTCCACCGACATTTCACTCCCGGGCTATTCTGGTTATATTGGGAATGGCAAACTTGAGGTTGGAAGCTCTCCTCATGTCAATACTTTGAGTCAGGGAGGTAGTTCTTTGAACGAGTTAAATGGAAATCCAAATCCTTACTTAAATGTACAACAGTGTGATCAATTTGCATACCCTCCTCCGCAAGATCTCGAGGAAGTGAAACATCACCAAACAATGAATAGTAAATCAAATACTATGGATTACCAAGTTAATAACAACTATGAACTTCCAAGATCATTATTTGAAAATGAACATCAGCAGTTCTGGAATTCTACTAATGGCTCTTGTGGGATTGCTATGTATAATGAGAATGGTTACCATAGGGTAAGCAAGTAG 1083 0.3786 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTEKPTLLQGERSNMEEIISKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVRVLQAQLAEIQQRLSYWSNLEKINNLEHLRQMEDSLRESINRLCIQKENLRKRQLMSLDCANQLPEGMTLPLMMAGLQESQPLSWLLSGDNHQLMLPNESKFLPFSDNGNRDVECSTDISLPGYSGYIGNGKLEVGSSPHVNTLSQGGSSLNELNGNPNPYLNVQQCDQFAYPPPQDLEEVKHHQTMNSKSNTMDYQVNNNYELPRSLFENEHQQFWNSTNGSCGIAMYNENGYHRVSK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04040 360 Coils Coil 77 97 - -
Trre16g04040 360 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Trre16g04040 360 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g04040 360 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Trre16g04040 360 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g04040 360 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g04040 360 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g04040 360 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Trre16g04040 360 Coils Coil 114 134 - -
Trre16g04040 360 Coils Coil 154 174 - -
Trre16g04040 360 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 220 - -
Trre16g04040 360 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Trre16g04040 360 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre16g04040 360 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04040 Trre-Chr16 45550928 45553858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04040 1 276 Type I MADS-box Gene Family AT2G03060 50.526 1.20e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g04040 SRF-TF 4.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04040 - - pvu:PHAVU_003G189100g 585.104