Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04030 ATGGACACTAAATCACTTATAAGTTTGAGCTCTAATTACCATGACATACATGAAAAGCCATTTTCATTTACGTGCCAATTTTCAAACAGCAGTGAAAATAGTAGTGATCAATATACTTTTCCAACGAATTTCACCAAGGATCAATTTCCCAGCTATCTAGATTCTGTTATGGACGAATACTATAATAATAGTACCCTTAAATTTCAAGACCCTTTATACAAATTTCTCACCATTGAAGCAAGTCAACATGTATTACCAAGCCTGCAAGATAGCTCTATCTCTATGTTGACAATGGAGGCTAAAACACTTATGGGTGGGAGTGGGAGCTCTAATTACCAAGATGACCAATTTTCTTACACTGGAAACAATAGTGGACAATATTTCGCAATGAATTTCTCCAAGGACGAATTTGTCATTCCTCCTCTGGAGTATGATAACATTTGTTACCCTTTAGATCAATCTCTCTCTATTGAACCAACACCAAACTTGCAACTGCAAGACATTGATTTTGATTTTGTGAATGAAGGATTTTTGGGCTTGAATGAAATGATTGATTCTTTGTTTCATTCAGAAAAAGAACAGTTATGCTGCACTAATGAAATTAAGAAGGAGGTTGTGGAGTTTAAGCCTCAAGAGGAAGAGAGAATTAGTTGTAATTTTGATGATACAAAGACATTATCAAGGAATACCATATCTCAGTATTTTTATATGCCAATATGTCAAGCTGCTAAAGAACTTAATGTTGGCCTCACACTATTGAAAAAAAGGTGTAGGGAATTGGGTATTCGTAGGTGGCCCCACAGGAAACTCATAAGCCTTCAAACTTTGATTAATAATGTTCAGGAAATGGGAAAGGAGGGGCCATTAAGTGATGAAATATTAGAGATGTTGGAAAAGGAAAAGAAACTTGTAGAAGAGATGCCGGATATGGAATTGGAACATGGTACAAAAAGGCTTAGACAAGCATGTTTTAAGGCCAACTACAAGAAGAGAAAACTTATGGAGCAAGAGGAGAAGCTAGATGTTTTGAGACAATATATGGATAGTTTGTAG 1053 0.3571 MDTKSLISLSSNYHDIHEKPFSFTCQFSNSSENSSDQYTFPTNFTKDQFPSYLDSVMDEYYNNSTLKFQDPLYKFLTIEASQHVLPSLQDSSISMLTMEAKTLMGGSGSSNYQDDQFSYTGNNSGQYFAMNFSKDEFVIPPLEYDNICYPLDQSLSIEPTPNLQLQDIDFDFVNEGFLGLNEMIDSLFHSEKEQLCCTNEIKKEVVEFKPQEEERISCNFDDTKTLSRNTISQYFYMPICQAAKELNVGLTLLKKRCRELGIRRWPHRKLISLQTLINNVQEMGKEGPLSDEILEMLEKEKKLVEEMPDMELEHGTKRLRQACFKANYKKRKLMEQEEKLDVLRQYMDSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04030 350 Pfam RWP-RK domain 226 272 IPR003035 -
Trre16g04030 350 Coils Coil 333 350 - -
Trre16g04030 350 ProSiteProfiles RWP-RK domain profile. 209 293 IPR003035 -
Trre16g04030 350 PANTHER PROTEIN RKD4 136 334 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04030 Trre-Chr16 45504469 45506191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04030 217 332 AtRKD Transcription Factor Family AT1G18790 64.463 3.98e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre16g04030 RWP-RK 4.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04030 - - mtr:25480439 204.912