Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04028 ATGAAAAAGAGGCAAGTAGTAGTGGTGGTGAAAAGCAACAAAACTTCATCTTCAAGAAATGTTATTAGATATGGAGAGTGTCAAAAGAATCATGCTGCGTATAGCGGAGGTTATGCCGTTGATGGTTGTACGGAATTCATGGCAATTAGCTCAACAGGAGAAGGAGCACTTACATGTGCAGCTTGTGGTTGTCATAGGAACTTCCACAAAAGACAAGTGCAAAGTACAAACTCATGA 237 0.4051 MKKRQVVVVVKSNKTSSSRNVIRYGECQKNHAAYSGGYAVDGCTEFMAISSTGEGALTCAACGCHRNFHKRQVQSTNS 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04028 78 Pfam ZF-HD protein dimerisation region 22 73 IPR006456 -
Trre16g04028 78 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 72 IPR006456 -
Trre16g04028 78 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 74 - -
Trre16g04028 78 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 23 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04028 Trre-Chr16 45458507 45458743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04028 1 75 Zinc finger-homeobox gene family AT1G18835 61.039 8.83e-27 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre16g04028 ZF-HD_dimer 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04028 - - gmx:100785967 104.375