Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04027 ATGGTAAGGCCACCATGTTGTGAGAAATTAGGTATTAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATCTTAGTTTCTTACATTCAACAACATGGACCTGGAAATTGGAGATCAGTTCCTACCAATACAGGTTTGATGAGATGTAGTAAGAGTTGTAGACTTAGATGGACAAATTATCTTCGACCCGGCATCAAACGAGGCAACTTCACAGATCATGAAGAGAAAATGATTGTTCATCTTCAAGCTCTTTTGGGCAACAGATGGGCTGCTATAGCTTCGTATCTTCCTCAGAGGACGGACAACGATATAAAAAATTATTGGAATACTCATTTGAAGAGAAAGCTGAACAAAGATCAAAGTTCTGATGAAGGTGGTATTGATCAAGAAGCTCGTTCGCAGCCGCCAAATAAAGGACAATGGGAGAGAAGGCTACAAACAGATATTCATATGGCCAAACAAGCCTTATCTGAGGCTTTGTCTCTTCAACAAAGCCCAACCAAATCTGAGATGAAGCCCTCATCAAGTTCTTCTCATTCTCATCATGAACATCTACCAAATCTGCATATTCCATCTCCATATGCATCAAGCTATGAAAACATTGCTAGATTGATGGAAAATTGGATGAAATCACCTAACTCAGCTGAAACAAATTCCTCATCAATATTCAGCAACATAGTGACCACTGCAGGATCAAGTTGTAGTGAAGGAGCACAAAGCACAACACAAGATCATCATATTTTTGACTCTAAAATGTTCACCTCCAAATCTGAATATTATGCCTCTAGATTTAGGGCAACTCATGAAGGGAACAACAACTTGATGACTACTAAAGATAGTCTCTTTCAAGATGAAATGATTAATATTAAAGGAAAGATGGAAACAAATGTCCCTTTAACTTTGTTGGAAAAATGGCTTTTTGAAGATGGAGGGGCAACTCATGAATGCCATGAAGATCTTATAAATATGTCATTGGGAGATCAAAGTACTTCAGATTTGTTTTAG 1005 0.3801 MVRPPCCEKLGIKKGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKRKLNKDQSSDEGGIDQEARSQPPNKGQWERRLQTDIHMAKQALSEALSLQQSPTKSEMKPSSSSSHSHHEHLPNLHIPSPYASSYENIARLMENWMKSPNSAETNSSSIFSNIVTTAGSSCSEGAQSTTQDHHIFDSKMFTSKSEYYASRFRATHEGNNNLMTTKDSLFQDEMINIKGKMETNVPLTLLEKWLFEDGGATHECHEDLINMSLGDQSTSDLF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04027 334 Gene3D - 13 66 - -
Trre16g04027 334 CDD SANT 69 112 IPR001005 -
Trre16g04027 334 Gene3D - 69 145 - -
Trre16g04027 334 FunFam MYB-related transcription factor 13 66 - -
Trre16g04027 334 FunFam Transcription factor MYB30 68 126 - -
Trre16g04027 334 CDD SANT 16 61 IPR001005 -
Trre16g04027 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre16g04027 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre16g04027 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre16g04027 334 MobiDBLite consensus disorder prediction 159 174 - -
Trre16g04027 334 MobiDBLite consensus disorder prediction 159 192 - -
Trre16g04027 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Trre16g04027 334 SMART sant 13 63 IPR001005 -
Trre16g04027 334 SMART sant 66 114 IPR001005 -
Trre16g04027 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre16g04027 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre16g04027 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre16g04027 334 MobiDBLite consensus disorder prediction 115 141 - -
Trre16g04027 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04027 Trre-Chr16 45423134 45424526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04027 1 328 MYB Transcription Factor Family AT5G62470 48.925 5.28e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g04027 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04027 K09422 - gmx:100799402 389.423