Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04007 ATGGAGGGAGGAGATGATCTCCACCACCATCATCACCACCACCATCAGCACCTCCACCATCAGCAGCATCAACATCAGCAGCAGCAGCAGCGACAAAACTTCCCATTTCAACTTCTTGAAAAAAAAGAAGATAATCAAGAAGCAGCATCATGTTCAACTTCATCACCATACCCATCTTTAGCAATCACACCAATCTCACCAACAGAACCAAGTACATCAAATTCAAACCGATCCAACCAACTAGTATCAGCCTCGGCACCAACAACCTCGGACCCCGGAAACAAAAAACCGCCACCAAAAAGAACCTCAACCAAAGACCGTCATACCAAAGTAGAAGGCCGTGGCCGCCGTATAAGAATGCCGGCACTCTGCGCCGCTCGAGTTTTTCAACTAACACGAGAATTAGGCCATAAATCAGACGGTGAAACCATTGAATGGCTCCTCCAACAAGCTGAACCAGCTGTTATAGCAGCAACTGGTACCGGAACTATTCCCGCTAACTTCACTTCTCTCAACATCTCACTTCGTAGCTCAGGCTCTTCCATGTCTGTTCCATCTCAGCTTAGATCTTCTTACTTCAACCCAAATTTCTCACTTCAACAAAGAAGAACACTTTTTCCTGGAATTGGTTTATCATCTTCAGATAACAGCAGCAACAACAACAACACTTCAATGCTTCTAAATTTCCAATCAAATAACTTAAACCTAACAACAAACATGTTGCAGGCGAAACAAGAGCTTCGAGAAGGAAACGCAAACGCGAACGCGCCATCTTCATCAACAACTTTGGATTTATCAGAAACGAGTGGAGGAGAAGAATCCATGGGAGGTGGAAGAAAGAGAAGAACTGGCAGTGAGCAAGATTTATCATCAATACAACATCAAATGGGAAGTTATCTATTGCAATCAAGTGCAGGTTCGATTCCGGCAAGTCATACTCAGATTCCGGCGAATATATGGATGGTGGCTAATTCTAATAACCAAATAATGAGTGGTGGTGATCCTATTTGGACATTTCCGTCGGTGAATAATAGTGCTGCTGCTTTGTATAGAGGAGCAGTTTCAACAAGTGGTTTACATTTTATGAATTTTCCACAACCTATGGCTTTGATGCCAGGTCAGCAATTAGGTAATTCGTCCGGTGGTGGCGGAGGTGGTGGTGGAGGTGGAAGTAATATCAATATGAATATGAACATGAATGAAGGACATTTGAGTATGCTCGCCGGTCTTAGTCCTTATCGTCCGGTAACTGATCACCCTCAATCTCATCAACAGCAACAACATCAACCAAGTGGATCACAGTCGCATCATCGCGGCGGTAGCCATGATGATAGACATGATAATTGA 1347 0.4388 MEGGDDLHHHHHHHHQHLHHQQHQHQQQQQRQNFPFQLLEKKEDNQEAASCSTSSPYPSLAITPISPTEPSTSNSNRSNQLVSASAPTTSDPGNKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIGLSSSDNSSNNNNTSMLLNFQSNNLNLTTNMLQAKQELREGNANANAPSSSTTLDLSETSGGEESMGGGRKRRTGSEQDLSSIQHQMGSYLLQSSAGSIPASHTQIPANIWMVANSNNQIMSGGDPIWTFPSVNNSAAALYRGAVSTSGLHFMNFPQPMALMPGQQLGNSSGGGGGGGGGGSNINMNMNMNEGHLSMLAGLSPYRPVTDHPQSHQQQQHQPSGSQSHHRGGSHDDRHDN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04007 448 MobiDBLite consensus disorder prediction 251 291 - -
Trre16g04007 448 MobiDBLite consensus disorder prediction 98 116 - -
Trre16g04007 448 Pfam TCP family transcription factor 102 243 IPR017887 -
Trre16g04007 448 MobiDBLite consensus disorder prediction 251 269 - -
Trre16g04007 448 MobiDBLite consensus disorder prediction 1 116 - -
Trre16g04007 448 ProSiteProfiles TCP domain profile. 104 158 IPR017887 -
Trre16g04007 448 MobiDBLite consensus disorder prediction 410 448 - -
Trre16g04007 448 MobiDBLite consensus disorder prediction 417 436 - -
Trre16g04007 448 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 433 IPR005333 GO:0003700
Trre16g04007 448 MobiDBLite consensus disorder prediction 48 97 - -
Trre16g04007 448 MobiDBLite consensus disorder prediction 10 24 - -
Trre16g04007 448 MobiDBLite consensus disorder prediction 375 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04007 Trre-Chr16 45294414 45295760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04007 25 375 TCP Transcription Factor Family AT3G47620 42.032 6.48e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre16g04007 TCP 5.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04007 - - psat:127073804 623.239