Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04005 ATGGGGTCAGAGAGTATTGCTCCAATGGTTGAGACATCAAAAAACAGGTCTTCTCCTGGTATAGTGAATCAAGGGAAAGTCCCTAAGAGAATTCACAAGGCCGAAAGGGAGAAAATGAAGCGTGAACACTTGAACGAACTCTTTCTTGATCTTGCCAATGTTCTTGATCTCAATGAGCCGAACAATGGAAAGGCTTCTATATTGTGTGAAGCTTCCAGGCTGCTAAAGGATTTGCTCTGTCAAATTCAGTCCCTCAAGAAGGAGAACGTCACTTTGTTGTCTGAATCTCATTATGTAACCATGGAGAAAAATGAGCTGAAGGAGGAAAATGGTAGTCTAGAAACTCAAATTGAGAAGCTTCAAGGAGAGATACAGGCAAAAATGGCTCAATCCAAACCTGACCTGAATGTACCTCCTCAATTGGAGCTTGAGCAGCCAGAACTGACAAAATTTCCAGGACATGGTTTCCAAATGCCTACCATAGAACCTACATTGCAGCAAGGATCTGCTGTTTTGGTTGTCCCTTTTCGTCCTGATCTTCAAGCTGCTTTTCCAGCTCCTAATGTTACTGAGCTCACGCCAAAACCTGCACCTGTTATCAGTAAACCACATGCCAGGTATCCCACACCAGCAGATTCGTGGCCATCTCAACTGCTTGGAGAGCAACCAACTTCTAATCTGTAG 684 0.4386 MGSESIAPMVETSKNRSSPGIVNQGKVPKRIHKAEREKMKREHLNELFLDLANVLDLNEPNNGKASILCEASRLLKDLLCQIQSLKKENVTLLSESHYVTMEKNELKEENGSLETQIEKLQGEIQAKMAQSKPDLNVPPQLELEQPELTKFPGHGFQMPTIEPTLQQGSAVLVVPFRPDLQAAFPAPNVTELTPKPAPVISKPHARYPTPADSWPSQLLGEQPTSNL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04005 227 Coils Coil 75 95 - -
Trre16g04005 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Trre16g04005 227 PANTHER TRANSCRIPTION FACTOR BHLH47 9 225 - -
Trre16g04005 227 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g04005 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 93 IPR036638 GO:0046983
Trre16g04005 227 CDD bHLH_AtILR3_like 33 107 - -
Trre16g04005 227 Gene3D - 26 104 IPR036638 GO:0046983
Trre16g04005 227 MobiDBLite consensus disorder prediction 1 28 - -
Trre16g04005 227 Coils Coil 103 130 - -
Trre16g04005 227 MobiDBLite consensus disorder prediction 188 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04005 Trre-Chr16 45240496 45241980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04005 22 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 51.131 9.79e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04005 - - mtr:11438092 384.03