Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03998 ATGGGAAATTGCTTTGGAAGTCGTTCCAAGGTTGATGACCCTTTCAGCTCCCAACCCAATTCTGATATTACAAAAGTTCCTCTTAGAAGCACTCAATTATTAGCTCATTCAAGTGCAGCAATACATGGATACAGTGATGGAGGTAAACCTGGGATTCTACCAACTCCAAGATCTGAAGGGGACATACTTTCTTCTCCACATTTAAAAGCATTCACATTTAAGGATCTTAGAAATGCCACTAAGAATTTCAGTAATGATTGTTTAATTGGACAAGGAGGATTTGGTTATGTCTATAAAGGATGGATTGATGGTCATTCTCTTAGGGCTGCAAAGCCTGGATCTGGAACTGCTGTTGCTGTCAAGAAGCTTAAGCCTGAAGGCTTTCAAGGCCATAAGGAGTGGTTGTCTGAACTCAACTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTACTGGATATTGCCTTGACGGGGATAACAGGCTTCTAGTCTATGAGTACATGCCTAATGGAAGCTTGGAAGATCATCTATTTCGCAAGGGAACACACATACTTCCTTGGGCAACAAGAATCAAAGTTGCCACTGGTGCTGCTCGAGGTCTCACCTTCCTACATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGACTCGGAATTTAATGCAAAACTCTCGGACTTTGGATTGGCCAAAGCAGGCCCCACTGGTGATCGTTCTCATGTTTCTACTCAAGTCTTGGGCACTCATGGCTATGCTGCTCCTGAATATATTCTTACAGGTCGGCTGACAACAAGGTGCGATGTGTATAGCTTTGGAGTTGTGTTATTAGAACTACTATCAGGGCGAAATGCTGTCGACAAAACAAAATCTGGAGCGGAACATAATTTGGTAGATTGGGCAAGACCGTATTTGGGCGATAGAAGGAAGTTGTTTCGGATAATGGACACAAGATTAGAAGGGCAGTATCCACAAAGGGCAGCTTATACAGCTGCAATTCTTGCATTACAATGTATTAGCGAGGCCAAGTTTAGACCACAAATGTCTGAGGTTTTGGCTACTTTGGAACAATTGCCAGTTATCAGACATTCTGCTAGTCCTTCTAGATCAGAGGAGAAACCGATCTCAAGTCCAATGAGAGAGAGACTGTGA 1173 0.4211 MGNCFGSRSKVDDPFSSQPNSDITKVPLRSTQLLAHSSAAIHGYSDGGKPGILPTPRSEGDILSSPHLKAFTFKDLRNATKNFSNDCLIGQGGFGYVYKGWIDGHSLRAAKPGSGTAVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLTGYCLDGDNRLLVYEYMPNGSLEDHLFRKGTHILPWATRIKVATGAARGLTFLHDSNQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVLGTHGYAAPEYILTGRLTTRCDVYSFGVVLLELLSGRNAVDKTKSGAEHNLVDWARPYLGDRRKLFRIMDTRLEGQYPQRAAYTAAILALQCISEAKFRPQMSEVLATLEQLPVIRHSASPSRSEEKPISSPMRERL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03998 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Trre16g03998 390 FunFam Serine/threonine-protein kinase PBS1 169 380 - -
Trre16g03998 390 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g03998 390 MobiDBLite consensus disorder prediction 373 390 - -
Trre16g03998 390 PANTHER OS01G0588500 PROTEIN-RELATED 36 365 - -
Trre16g03998 390 Gene3D Transferase(Phosphotransferase) domain 1 169 381 - -
Trre16g03998 390 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Trre16g03998 390 SUPERFAMILY Protein kinase-like (PK-like) 61 363 IPR011009 -
Trre16g03998 390 MobiDBLite consensus disorder prediction 370 390 - -
Trre16g03998 390 Pfam Protein tyrosine and serine/threonine kinase 88 302 IPR001245 GO:0004672|GO:0006468
Trre16g03998 390 Gene3D Phosphorylase Kinase; domain 1 55 168 - -
Trre16g03998 390 CDD STKc_IRAK 89 365 - -
Trre16g03998 390 FunFam Serine/threonine-protein kinase BIK1 53 168 - -
Trre16g03998 390 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03998 Trre-Chr16 45179478 45183037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03998 69 362 Glycoside Hydrolase AT3G07070 53.691 2.12e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g03998 PK_Tyr_Ser-Thr 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03998 - - gmx:100791844 609.757