Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03995 ATGGTAAATTCTGCCCCTGCTAGCTTCTGGACTCGAGCAAACGCTCTTCTCAGGAAGAATTTAACCTTCCAGAAACGGAACAAAAAGACCAACATTAGGCTGATTCTATTCCCATTGTTCCTGTGCATATTGCTGGTTCTCCTCCAACATTTAATTGACAATCAATTGGATAAACCTGGATTCAAATGCGGCTGCATCTGTACCAACGGCAATACAACATGTGTTGACTCAGAGAAGGTTTGTGGAGTCCAGTATTCCGATCAGAATCAAGTTTTAGCCTGTGCAATTCCTAACCCACCGGAATGGCCTCCTCTCTTGCAACTTCCGACCGGCGAGTTATGGTATTATACCATGCTCTTCACAGCCGACAATCACTCCTTTGGACAAATTGTGATTGACAATATGTTTCCAAGTGCCTTGACTATGAATTACACCGATATCATGGATAGTTTGGCAACAAACGTGCTGGGATCGGAATTAACGCCCGAGAACAACAATTTTCTTGAACATGCTTTCACTTCGGATGTTCCCATTTATTATCTACAAAGCCACTGCCCTCAGGACAACATACCATTCCTAGACATCTACCAGATAGGAGGCAATACTTTGCAGCAGTATACAAAATCATTTTCATACAAGATAGCAGGCTTTACTGTGGAGAAAGATATCATATGTGCCGATGGTCTAAATTTTTGGCGTAACAGTGCTTCTGAGATCAACAATCAGTTATATGAAGGTCTAGAGATCAATACAATAGTTTCAGCTTTTGATTTTCTTAATTCAAATGGGAATGGATTTAATGTCACTGTATGGTACAAGTCAATCTACAAGGGTGTCACTAATTTTGGTCCTACTCCATTGTTGCGATTTCCTCGTTCTATAAATTTGGTATCAAATGCCTACCTGCAGTTTCTGCGGGGACCTGGTACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAATCTGAGACCCCATTTAGGATTGAGGTAGCTTCTCTCCTGGGCGGTCTGTTCTATACATGGGTCATCCTGCAACTTTTTCCAGTTGTTCTGACATCACTGGTTTATGAGAAGCAACACAAATTAAGAATCATGATGAAAATGCACGGTCTTGGTGACGGGCCATATTGGATGATTACATATGGTTATTTTCTTGTATTATCAGTGTTCTACATGTTGTGCTTTGTGATATTCGGCTCAGTCTTAGGATTAAAATTCTTCACCTTGAATGACTACAGCATCCAGTTCGTGTTCTATTTCATCTATATAAACTTACAAATTTCACTGGCATTTCTGTTGGCTTCCTTTTTCTCAAATGTTAAGACTGCTACAGTAACCGCATACATAGGTGTCTTTGGCACCGGGCTATTATCCGGGTTTCTTTTCCAATTTTTTATTGAAGATTCTTCATTTCCAAGAGGATGGATCGTTTTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGTGTTGTATGAGTTTGCACAGTCTGCCACCAGTGGCAGTAATTCTGGGACTGATGGTATGCGGTGGCAGGATCTGAGTGATAACACCAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATAGTAGTGCTTTTTGTTGCTTATTACATCGATCAAGTATTTTCAACAGGAAGTAGAAAAAGTCCACTTTTCTTCTTGAAAGGATTTCAGAAAAAACCTCTTTCAACATGCAAGAAGTTTAGTATTCAAAGGCAGGGGTCAAAAGTTTTGCCTCAGATTGAGAAACCAGATGTCATCCAAGAGAAGGAGAAGGTTGAACAACTTCTACTTGAACCAACCATTGATCATGCAATTCTCTGCGACGACCTAAAAAAATTCTATCCAGGAAGGGATGGAAATCCAGGGAAATTTGCAGTGAGTGAATTATTCCTTGCTGTACCTCGAGGGGAATGCTTCGGTATGCTTGGTCCTAATGGGGCTGGGAAGACTTCTTTCATCAGTATGATGATTGGTCTCACAAAGCCAACATCTGGTGCGGCATATATTCAAGGCCTGGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGAGTATGCCCACAACATAACTTGCTGTGGGAAAACTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGTTCACTCTTGACTCAAGCAGTAGAAAAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATAAACAAGCTGGAAAATATAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGACCCCAAAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGGAAATGCCTATGGAATGTTATCAAGCTTGCAAAACAGGACCGCGCAATCATTCTGACTACGCATTCTATGGAAGAGGCAGAGGCCTTATGTGATCGATTAGGAATATTTGTAAATGGTAGCTTGCAGTGCATTGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTTCGGATCACGAGAAGGATGTGGAGAACATGGTACAACAGCTCACCCCAAATGCCAACAAGATATACCAACTCTCTGGCACCCAAAAATTTGAGCTGCCAAAAGAGGATGTTAAAATAGCAAATGTATTTCAAGCTGTTGAAGTTGCAAAAAGAAACTTCACTGTTTTTGCATGGGGTTTAGCCGACACCACATTAGAAGATGTCTTCATTAAGGTAGCACGCAAGGCTCAAGCATTTGATACGTTGTCATAA 2802 0.4069 MVNSAPASFWTRANALLRKNLTFQKRNKKTNIRLILFPLFLCILLVLLQHLIDNQLDKPGFKCGCICTNGNTTCVDSEKVCGVQYSDQNQVLACAIPNPPEWPPLLQLPTGELWYYTMLFTADNHSFGQIVIDNMFPSALTMNYTDIMDSLATNVLGSELTPENNNFLEHAFTSDVPIYYLQSHCPQDNIPFLDIYQIGGNTLQQYTKSFSYKIAGFTVEKDIICADGLNFWRNSASEINNQLYEGLEINTIVSAFDFLNSNGNGFNVTVWYKSIYKGVTNFGPTPLLRFPRSINLVSNAYLQFLRGPGTKMLFEFVKEMPKSETPFRIEVASLLGGLFYTWVILQLFPVVLTSLVYEKQHKLRIMMKMHGLGDGPYWMITYGYFLVLSVFYMLCFVIFGSVLGLKFFTLNDYSIQFVFYFIYINLQISLAFLLASFFSNVKTATVTAYIGVFGTGLLSGFLFQFFIEDSSFPRGWIVFMELYPGFALYRVLYEFAQSATSGSNSGTDGMRWQDLSDNTNGMKEVLIIMFAEWIVVLFVAYYIDQVFSTGSRKSPLFFLKGFQKKPLSTCKKFSIQRQGSKVLPQIEKPDVIQEKEKVEQLLLEPTIDHAILCDDLKKFYPGRDGNPGKFAVSELFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYIQGLDIRTHMDGIYTSMGVCPQHNLLWENLTGREHLLFYGRLKNLKGSLLTQAVEKSLKSLNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEAEALCDRLGIFVNGSLQCIGNPKELKGRYGGTYVFTMTTSSDHEKDVENMVQQLTPNANKIYQLSGTQKFELPKEDVKIANVFQAVEVAKRNFTVFAWGLADTTLEDVFIKVARKAQAFDTLS 933
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03995 933 CDD ABC_subfamily_A 615 836 - -
Trre16g03995 933 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 573 927 IPR026082 GO:0016020|GO:0055085|GO:0140359
Trre16g03995 933 FunFam ABC transporter A family member 7 600 876 - -
Trre16g03995 933 Pfam ABC transporter 636 777 IPR003439 GO:0005524
Trre16g03995 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 839 IPR027417 -
Trre16g03995 933 SMART AAA_5 641 825 IPR003593 GO:0016887
Trre16g03995 933 Gene3D - 603 879 IPR027417 -
Trre16g03995 933 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524|GO:0016887
Trre16g03995 933 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 611 848 IPR003439 GO:0005524
Trre16g03995 933 Pfam ABC-2 family transporter protein 330 542 IPR013525 GO:0016020|GO:0140359
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre16g03995 Trre-Chr16 45141387 45149987 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03995 620 859 Calmodulin-binding Proteins AT2G36910 23.887 1.05e-12 70.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03995 - - tpra:123887097 1667.51