Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03994 ATGATGGTAAATTCTGCCCCTGCTAGCTTCTGGACTCGAGCAAACGCTCTTCTCAGGAAGAATTTAACCTTCCAGAAACGGAACAAAAAGACCAACATTAGGCTGATTCTATTCCCATTGTTCCTGTGCATATTGCTGGTTCTCCTCCAACATTTAATTGACAATCAATTGGATAAACCTGGATTCAAATGCGGCTGCATCTGTACCAACGGCAATACAACATGTGTTGACTCAGAGAAGGTTTGTGGAGTCCAGTATTCCGATCAGAATCAAGTTTTAGCCTGTGCAATTCCTAACCCACCGGAATGGCCTCCTCTCTTGCAACTTCCGACCGGCGAGTTATGGTATTATACCATGCTCTTCACAGCCGACAATCACTCCTTTGGACAAATTGTGATTGACAATATGTTTCCAAGTGCCTTGACTATGAATTACACCGATATCATGGATAGTTTGGCAACAAACGTGCTGGGATCGGAATTAACGCCCGAGAACAACAATTTTCTTGAACATGCTTTCACTTCGGATGTTCCCATTTATTATCTACAAAGCCACTGCCCTCAGGACAACATACCATTCCTAGACATCTACCAGATAGGAGGCAATACTTTGCAGCAGTATACAAAATCATTTTCATACAAGATAGCAGGCTTTACTGTGGAGAAAGATATCATATGTGCCGATGGTCTAAATTTTTGGCGTAACAGTGCTTCTGAGATCAACAATCAGTTATATGAAGGTCTAGAGATCAATACAATAGTTTCAGCTTTTGATTTTCTTAATTCAAATGGGAATGGATTTAATGTCACTGTATGGTACAAGTCAATCTACAAGGGTGTCACTAATTTTGGTCCTACTCCATTGTTGCGATTTCCTCGTTCTATAAATTTGGTATCAAATGCCTACCTGCAGTTTCTGCGGGGACCTGGTACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAATCTGAGACCCCATTTAGGATTGAGGTAGCTTCTCTCCTGGGCGGTCTGTTCTATACATGGGTCATCCTGCAACTTTTTCCAGTTGTTCTGACATCACTGGTTTATGAGAAGCAACACAAATTAAGAATCATGATGAAAATGCACGGTCTTGGTGACGGGCCATATTGGATGATTACATATGGTTATTTTCTTGTATTATCAGTGTTCTACATGTTGTGCTTTGTGATATTCGGCTCAGTCTTAGGATTAAAATTCTTCACCTTGAATGACTACAGCATCCAGTTCGTGTTCTATTTCATCTATATAAACTTACAAATTTCACTGGCATTTCTGTTGGCTTCCTTTTTCTCAAATGTTAAGACTGCTACAGTAACCGCATACATAGGTGTCTTTGGCACCGGGCTATTATCCGGGTTTCTTTTCCAATTTTTTATTGAAGATTCTTCATTTCCAAGAGGATGGATCGTTTTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGTGTTGTATGAGTTTGCACAGTCTGCCACCAGTGGCAGTAATTCTGGGACTGATGGTATGCGGTGGCAGGATCTGAGTGATAACACCAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATAGTAGTGCTTTTTGTTGCTTATTACATCGATCAAGTATTTTCAACAGGAAGTAGAAAAAGTCCACTTTTCTTCTTGAAAGGATTTCAGAAAAAACCTCTTTCAACATGCAAGAAGTTTAGTATTCAAAGGCAGGGGTCAAAAGTTTTGCCTCAGATTGAGAAACCAGATGTCATCCAAGAGAAGGAGAAGGTTGAACAACTTCTACTTGAACCAACCATTGATCATGCAATTCTCTGCGACGACCTAAAAAAATTCTATCCAGGAAGGGATGGAAATCCAGGGAAATTTGCAGTGAGTGAATTATTCCTTGCTGTACCTCGAGGGGAATGCTTCGGTATGCTTGGTCCTAATGGGGCTGGGAAGACTTCTTTCATCAGTATGATGATTGGTCTCACAAAGCCAACATCTGGTGCGGCATATATTCAAGGCCTGGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGAGTATGCCCACAACATAACTTGCTGTGGGAAAACTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGTTCACTCTTGACTCAAGCAGTAGAAAAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATAAACAAGCTGGAAAATATAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGACCCCAAAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGGAAATGCCTATGGAATGTTATCAAGCTTGCAAAACAGGACCGCGCAATCATTCTGACTACGCATTCTATGGAAGAGGCAGAGGCCTTATGTGATCGATTAGGAATATTTGTAAATGGTAGCTTGCAGTGCATTGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTTCGGATCACGAGAAGGATGTGGAGAACATGGTACAACAGCTCACCCCAAATGCCAACAAGATATACCAACTCTCTGGCACCCAAAAATTTGAGCTGCCAAAAGAGGATGTTAAAATAGCAAATGTATTTCAAGCTGTTGAAGTTGCAAAAAGAAACTTCACTGTTTTTGCATGGGGTTTAGCCGACACCACATTAGAAGATGTCTTCATTAAGGTAGCACGCAAGGCTCAAGCATTTGATACGTTGTCATAA 2805 0.4068 MMVNSAPASFWTRANALLRKNLTFQKRNKKTNIRLILFPLFLCILLVLLQHLIDNQLDKPGFKCGCICTNGNTTCVDSEKVCGVQYSDQNQVLACAIPNPPEWPPLLQLPTGELWYYTMLFTADNHSFGQIVIDNMFPSALTMNYTDIMDSLATNVLGSELTPENNNFLEHAFTSDVPIYYLQSHCPQDNIPFLDIYQIGGNTLQQYTKSFSYKIAGFTVEKDIICADGLNFWRNSASEINNQLYEGLEINTIVSAFDFLNSNGNGFNVTVWYKSIYKGVTNFGPTPLLRFPRSINLVSNAYLQFLRGPGTKMLFEFVKEMPKSETPFRIEVASLLGGLFYTWVILQLFPVVLTSLVYEKQHKLRIMMKMHGLGDGPYWMITYGYFLVLSVFYMLCFVIFGSVLGLKFFTLNDYSIQFVFYFIYINLQISLAFLLASFFSNVKTATVTAYIGVFGTGLLSGFLFQFFIEDSSFPRGWIVFMELYPGFALYRVLYEFAQSATSGSNSGTDGMRWQDLSDNTNGMKEVLIIMFAEWIVVLFVAYYIDQVFSTGSRKSPLFFLKGFQKKPLSTCKKFSIQRQGSKVLPQIEKPDVIQEKEKVEQLLLEPTIDHAILCDDLKKFYPGRDGNPGKFAVSELFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYIQGLDIRTHMDGIYTSMGVCPQHNLLWENLTGREHLLFYGRLKNLKGSLLTQAVEKSLKSLNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEAEALCDRLGIFVNGSLQCIGNPKELKGRYGGTYVFTMTTSSDHEKDVENMVQQLTPNANKIYQLSGTQKFELPKEDVKIANVFQAVEVAKRNFTVFAWGLADTTLEDVFIKVARKAQAFDTLS 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03994 934 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 612 849 IPR003439 GO:0005524
Trre16g03994 934 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 574 928 IPR026082 GO:0016020|GO:0055085|GO:0140359
Trre16g03994 934 Pfam ABC-2 family transporter protein 331 543 IPR013525 GO:0016020|GO:0140359
Trre16g03994 934 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524|GO:0016887
Trre16g03994 934 FunFam ABC transporter A family member 7 601 877 - -
Trre16g03994 934 SMART AAA_5 642 826 IPR003593 GO:0016887
Trre16g03994 934 Gene3D - 604 880 IPR027417 -
Trre16g03994 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 840 IPR027417 -
Trre16g03994 934 CDD ABC_subfamily_A 616 837 - -
Trre16g03994 934 Pfam ABC transporter 637 778 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03994 Trre-Chr16 45141384 45149987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03994 621 860 Calmodulin-binding Proteins AT2G36910 23.887 9.66e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03994 - - tpra:123887097 1669.44